Variant report
Variant | rs72688558 |
---|---|
Chromosome Location | chr4:103067168-103067169 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10016408 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10516488 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10516490 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11730990 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11731061 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11737896 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1386174 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17211702 | 0.82[AMR][1000 genomes] |
rs17221648 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17271413 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4536928 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4550926 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs55991708 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs72686802 | 0.82[AMR][1000 genomes] |
rs72688506 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72688542 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs72688560 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs72688563 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7675302 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869164 | chr4:102483189-103213842 | Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv879682 | chr4:102859835-103088491 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:103064600-103069600 | Weak transcription | K562 | blood |