Variant report

Variant	rs72688563
Chromosome Location	chr4:103073191-103073192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10016408	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516488	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10516490	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11730990	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11731061	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11737896	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1386174	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17211702	0.81[AMR][1000 genomes]
rs17221648	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17271413	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4536928	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4550926	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55991708	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72686802	0.81[AMR][1000 genomes]
rs72688506	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72688542	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72688558	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72688560	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7675302	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103072000-103073200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:103072200-103073400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:103072400-103084800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:103072600-103073200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:103072600-103073200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:103072800-103073200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:103072800-103073200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:103072800-103073400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:103072800-103073800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:103073000-103073200	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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