Variant report

Variant	rs72693141
Chromosome Location	chr9:7479443-7479444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:7479400-7479550	AG09309	skin:	n/a	n/a
2	CTCF	chr9:7479440-7479590	HCPEpiC	choroid plexus:	n/a	n/a
3	CTCF	chr9:7479328-7479748	MCF-7	breast:	n/a	n/a
4	CTCF	chr9:7479320-7479470	NB4	blood:	n/a	n/a
5	CTCF	chr9:7479420-7479570	HMF	breast:	n/a	n/a
6	CTCF	chr9:7479420-7479570	GM12864	blood:	n/a	n/a
7	CTCF	chr9:7479420-7479570	SK-N-SH_RA	brain:	n/a	n/a
8	CTCF	chr9:7479300-7479450	HVMF	connective:	n/a	n/a
9	CTCF	chr9:7479440-7479590	NHDF-neo	bronchial:	n/a	n/a
10	CTCF	chr9:7479380-7479530	GM06990	blood:	n/a	n/a
11	CTCF	chr9:7479420-7479570	HAc	cerebellar:	n/a	n/a
12	CTCF	chr9:7479355-7479578	IMR90	lung:	n/a	n/a
13	CTCF	chr9:7479440-7479590	HRE	kidney:	n/a	n/a
14	CTCF	chr9:7479394-7479622	GM12878	blood:	n/a	n/a
15	CTCF	chr9:7479440-7479590	HMF	breast:	n/a	n/a
16	CTCF	chr9:7479380-7479530	AG04450	lung:	n/a	n/a
17	CTCF	chr9:7479320-7479550	HFF	foreskin:	n/a	n/a
18	CTCF	chr9:7479400-7479550	HPF	lung:	n/a	n/a
19	RAD21	chr9:7479335-7479626	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr9:7479400-7479550	HMEC	breast:	n/a	n/a
21	CTCF	chr9:7479420-7479570	HCM	heart:	n/a	n/a
22	E2F4	chr9:7479345-7479575	MCF10A-Er-Src	breast:	n/a	n/a
23	CTCF	chr9:7479380-7479530	HPAF	blood vessel:	n/a	n/a
24	CTCF	chr9:7479420-7479570	BJ	skin:	n/a	n/a
25	CTCF	chr9:7479440-7479531	Hela-S3	cervix:	n/a	n/a
26	CTCF	chr9:7479380-7479530	AG10803	skin:	n/a	n/a
27	CTCF	chr9:7479320-7479470	NHEK	skin:	n/a	n/a
28	CTCF	chr9:7479380-7479530	HEEpiC	esophagus:	n/a	n/a
29	CTCF	chr9:7479420-7479570	AG09319	gingival:	n/a	n/a
30	CTCF	chr9:7479346-7479612	MCF-7	breast:	n/a	n/a
31	CTCF	chr9:7479400-7479550	HPAF	blood vessel:	n/a	n/a
32	RAD21	chr9:7479347-7479592	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr9:7479380-7479530	HPF	lung:	n/a	n/a
34	CTCF	chr9:7479302-7479615	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr9:7479360-7479510	NHDF-neo	bronchial:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7401862..7402674-chr9:7479089..7479897,2	MCF-7	breast:

No data

Variant related genes	Relation type
RPL4P5	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72693151	1.00[AFR][1000 genomes]
rs72693165	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72695124	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34566	chr9:7291742-7781370	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv818681	chr9:7292836-7781365	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv831502	chr9:7428505-7599941	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1029032	chr9:7431547-7764888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv522302	chr9:7478453-7489047	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7477000-7481800	Weak transcription	Fetal Lung	lung

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