Variant report

Variant	rs72699028
Chromosome Location	chr9:3275086-3275087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12003214	1.00[ASN][1000 genomes]
rs16916321	1.00[ASN][1000 genomes]
rs16916366	1.00[ASN][1000 genomes]
rs16916373	1.00[ASN][1000 genomes]
rs7032669	1.00[ASN][1000 genomes]
rs7035860	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892086	chr9:3012276-3410838	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv466090	chr9:3237378-3349487	Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv613145	chr9:3237378-3349487	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1032529	chr9:3254763-3319778	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv539941	chr9:3254763-3319778	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3220400-3287400	Weak transcription	Psoas Muscle	Psoas
2	chr9:3223200-3277000	Weak transcription	HSMMtube	muscle
3	chr9:3223600-3284800	Weak transcription	Spleen	Spleen
4	chr9:3224000-3275800	Weak transcription	Gastric	stomach
5	chr9:3226600-3289600	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:3233600-3292600	Weak transcription	Pancreas	Pancrea
7	chr9:3234800-3294400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:3238000-3276800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:3241400-3278000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:3241600-3276800	Weak transcription	Placenta	Placenta
11	chr9:3242000-3278000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:3242200-3287800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:3243800-3279200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:3244200-3338400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:3245600-3277200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:3246800-3287000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:3250200-3276400	Weak transcription	HepG2	liver
18	chr9:3251600-3292600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:3252800-3278600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:3254200-3285600	Weak transcription	Fetal Heart	heart
21	chr9:3255000-3293000	Weak transcription	Small Intestine	intestine
22	chr9:3255800-3292800	Weak transcription	Fetal Muscle Leg	muscle
23	chr9:3256800-3293400	Weak transcription	Right Ventricle	heart
24	chr9:3257000-3289000	Weak transcription	Fetal Brain Male	brain
25	chr9:3257200-3290200	Weak transcription	Brain Germinal Matrix	brain
26	chr9:3257200-3290200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:3257200-3290200	Weak transcription	Brain Substantia Nigra	brain
28	chr9:3257200-3294000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:3257200-3294400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr9:3257400-3279000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:3257400-3289000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:3257800-3285800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:3258000-3277400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr9:3260000-3276200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:3261400-3281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:3263000-3276200	Weak transcription	Fetal Kidney	kidney
37	chr9:3263000-3286800	Weak transcription	Liver	Liver
38	chr9:3263200-3276200	Weak transcription	Fetal Stomach	stomach
39	chr9:3263200-3278400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:3263200-3294200	Weak transcription	Fetal Lung	lung
41	chr9:3263200-3294600	Weak transcription	Esophagus	oesophagus
42	chr9:3263200-3297800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr9:3263800-3286600	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:3265200-3280200	Weak transcription	Aorta	Aorta
45	chr9:3265200-3291000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:3265400-3278000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:3265400-3287200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:3265400-3293000	Weak transcription	Brain Angular Gyrus	brain
49	chr9:3265600-3275200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr9:3265600-3292600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links