Variant report

Variant	rs72709993
Chromosome Location	chr9:24464430-24464431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28390361	0.82[EUR][1000 genomes]
rs4628336	0.82[EUR][1000 genomes]
rs72708042	0.82[EUR][1000 genomes]
rs72708059	0.82[EUR][1000 genomes]
rs72709983	0.82[EUR][1000 genomes]
rs72709992	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv892795	chr9:24170867-24488294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv2753670	chr9:24332200-24532400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1030066	chr9:24419824-24500828	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv613850	chr9:24424199-24539632	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv892797	chr9:24428847-24511918	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv613851	chr9:24457291-24495241	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv892798	chr9:24457291-24495241	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv892799	chr9:24462860-24495241	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv892800	chr9:24462860-24498325	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24463200-24464600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:24464200-24466200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:24464400-24464800	Enhancers	NH-A	brain
4	chr9:24464400-24465000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:24464400-24465000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:24464400-24465200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:24464400-24466000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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