Variant report
| Variant | rs4628336 |
|---|---|
| Chromosome Location | chr9:24416542-24416543 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10121862 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12343911 | 0.91[EUR][1000 genomes] |
| rs1303911 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1329357 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1329358 | 0.90[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1360133 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1360134 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16908291 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16908299 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16908321 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16908325 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16908392 | 0.86[EUR][1000 genomes] |
| rs28390361 | 0.94[EUR][1000 genomes] |
| rs41370049 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56292813 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72708015 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72708034 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72708042 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72708059 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72709983 | 0.94[EUR][1000 genomes] |
| rs72709992 | 0.94[EUR][1000 genomes] |
| rs72709993 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752290 | chr9:24131800-24544900 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv892795 | chr9:24170867-24488294 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 3 | esv2753670 | chr9:24332200-24532400 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv892796 | chr9:24385357-24440663 | Enhancers Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv533263 | chr9:24386546-24942407 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 6 | nsv1032395 | chr9:24396046-24945219 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:24416400-24416600 | Enhancers | NH-A | brain |
