Variant report

Variant	rs16908325
Chromosome Location	chr9:24381517-24381518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10121862	1.00[ASN][1000 genomes]
rs1303911	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329357	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1329358	0.86[ASN][1000 genomes]
rs1360133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360134	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908291	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16908299	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16908321	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41370049	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4628336	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56292813	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708015	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72708034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708042	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72708059	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv892795	chr9:24170867-24488294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv526799	chr9:24332121-24385357	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv2753670	chr9:24332200-24532400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24381000-24381600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:24381200-24381600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:24381200-24381800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:24381200-24381800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr9:24381200-24382000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:24381200-24382000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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