Variant report

Variant	rs72711264
Chromosome Location	chr15:45760574-45760575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45755369..45757808-chr15:45760218..45761718,2	MCF-7	breast:
2	chr15:45755098..45758040-chr15:45759580..45761169,2	K562	blood:
3	chr15:45694335..45695966-chr15:45759644..45761765,2	K562	blood:

Variant related genes	Relation type
ENSG00000171763	Chromatin interaction
ENSG00000171766	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1153830	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1153831	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1153832	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16944629	0.88[ASN][1000 genomes]
rs1768458	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2088164	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2433600	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2433617	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2433619	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35828336	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4448883	0.84[ASN][1000 genomes]
rs56405528	0.90[ASN][1000 genomes]
rs60350201	0.85[ASN][1000 genomes]
rs61193305	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493154	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493157	0.81[ASN][1000 genomes]
rs7165838	0.81[ASN][1000 genomes]
rs7173983	0.81[ASN][1000 genomes]
rs72711278	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72711279	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72711280	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72711283	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72711284	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72711290	0.93[ASN][1000 genomes]
rs72711294	0.81[ASN][1000 genomes]
rs8023437	0.85[ASN][1000 genomes]
rs8029509	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8040466	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1523	chr15:45749900-45783825	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45750800-45781000	Weak transcription	Stomach Mucosa	stomach
2	chr15:45751200-45761200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:45751200-45801600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:45754200-45801600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:45756800-45761400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:45757000-45794600	Weak transcription	Colonic Mucosa	Colon
7	chr15:45757000-45801800	Weak transcription	Gastric	stomach
8	chr15:45759800-45768600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:45760000-45761000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr15:45760200-45760800	Enhancers	HSMMtube	muscle
11	chr15:45760200-45762400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:45760400-45761000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links