Variant report

Variant	rs16944629
Chromosome Location	chr15:45812419-45812420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45800845..45803632-chr15:45812326..45814076,2	K562	blood:
2	chr15:45810648..45813150-chr15:45813596..45817925,3	K562	blood:

Variant related genes	Relation type
ENSG00000104154	Chromatin interaction
ENSG00000179362	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10152697	0.86[CHB][hapmap]
rs10851425	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1153829	0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1153830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1153831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1153832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1288861	0.88[CHB][hapmap]
rs1288863	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1288865	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16952731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs17535381	0.88[CHB][hapmap]
rs17537244	0.93[CEU][hapmap];0.88[CHB][hapmap]
rs1768458	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2088164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2433600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2433617	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2433619	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2486287	0.88[CHB][hapmap]
rs35828336	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4448883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56179992	0.87[EUR][1000 genomes]
rs56405528	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59574269	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60350201	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60992352	0.87[EUR][1000 genomes]
rs61193305	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6493154	0.86[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493160	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7165838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7169748	1.00[CEU][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7170090	1.00[CEU][hapmap]
rs7171406	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7173983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72711264	0.88[ASN][1000 genomes]
rs72711278	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72711279	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72711280	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72711283	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72711284	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72711290	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72711294	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72711301	0.87[EUR][1000 genomes]
rs72713103	0.87[EUR][1000 genomes]
rs72713104	0.86[EUR][1000 genomes]
rs72713105	0.86[EUR][1000 genomes]
rs8023437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8025407	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs8029509	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040466	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8043334	0.80[YRI][hapmap]
rs9972498	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45767200-45813600	Weak transcription	Psoas Muscle	Psoas
2	chr15:45769400-45813000	Weak transcription	Fetal Intestine Large	intestine
3	chr15:45771000-45813400	Weak transcription	Right Ventricle	heart
4	chr15:45771200-45814000	Weak transcription	Placenta	Placenta
5	chr15:45773200-45814000	Weak transcription	Pancreas	Pancrea
6	chr15:45774600-45812800	Weak transcription	Fetal Brain Male	brain
7	chr15:45775600-45812800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:45778000-45813000	Weak transcription	Brain Germinal Matrix	brain
9	chr15:45778400-45812600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:45779400-45812800	Weak transcription	Fetal Brain Female	brain
11	chr15:45783800-45812800	Weak transcription	Fetal Kidney	kidney
12	chr15:45788000-45812800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:45788600-45812800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:45790800-45813000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:45792200-45813600	Weak transcription	HUVEC	blood vessel
16	chr15:45792200-45813600	Weak transcription	NH-A	brain
17	chr15:45792400-45812800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:45792400-45812800	Weak transcription	NHDF-Ad	bronchial
19	chr15:45792400-45812800	Weak transcription	Osteobl	bone
20	chr15:45792400-45813000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:45792600-45813200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:45792800-45812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:45793000-45812800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:45795600-45812800	Weak transcription	Fetal Heart	heart
25	chr15:45796800-45812800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:45797800-45813200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:45798600-45813400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:45799200-45812800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:45800600-45813000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:45800800-45813200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:45802200-45812800	Weak transcription	Fetal Lung	lung
32	chr15:45802200-45813200	Weak transcription	Primary T cells from cord blood	blood
33	chr15:45802200-45813800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:45802400-45812600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:45802400-45812600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:45802400-45812800	Weak transcription	Aorta	Aorta
37	chr15:45802400-45812800	Weak transcription	Brain Angular Gyrus	brain
38	chr15:45802400-45812800	Weak transcription	Fetal Intestine Small	intestine
39	chr15:45802400-45813600	Weak transcription	Esophagus	oesophagus
40	chr15:45802400-45813600	Weak transcription	Ovary	ovary
41	chr15:45802400-45813800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:45802400-45814000	Weak transcription	Gastric	stomach
43	chr15:45802400-45814000	Weak transcription	Lung	lung
44	chr15:45802800-45813000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:45803000-45812800	Weak transcription	Primary B cells from cord blood	blood
46	chr15:45803000-45812800	Weak transcription	Adipose Nuclei	Adipose
47	chr15:45803000-45813000	Weak transcription	Stomach Mucosa	stomach
48	chr15:45803200-45812800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:45803200-45813000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:45803200-45813000	Weak transcription	HSMM	muscle

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