Variant report

Variant	rs7173983
Chromosome Location	chr15:45842877-45842878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:45842744-45843052	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr15:45842754-45843001	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr15:45842823-45843054	HUVEC	blood vessel:	n/a	n/a
4	FOS	chr15:45842776-45843005	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr15:45842829-45843046	MCF10A-Er-Src	breast:	n/a	n/a
6	FOSL2	chr15:45842794-45843109	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:45841609..45843950-chr15:45877578..45879390,2	K562	blood:
2	chr15:45839175..45843127-chr15:45877708..45881310,7	K562	blood:
3	chr15:45842433..45843997-chr15:45848570..45850366,2	K562	blood:

Variant related genes	Relation type
HMGN2P46	TF binding region
ENSG00000260170	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10152697	0.86[CHB][hapmap]
rs10851425	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1153829	0.93[JPT][hapmap];0.86[YRI][hapmap]
rs1153830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1153831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1153832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1288861	0.88[CHB][hapmap]
rs1288863	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1288865	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs13376	0.83[YRI][hapmap]
rs1442797	0.83[YRI][hapmap]
rs16944629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16945605	0.86[YRI][hapmap]
rs16952731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs17535381	0.88[CHB][hapmap]
rs17537244	0.93[CEU][hapmap];0.88[CHB][hapmap]
rs1768458	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2088164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2433600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2433617	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2433619	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2486287	0.88[CHB][hapmap]
rs35828336	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4448883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55997350	0.89[EUR][1000 genomes]
rs56179992	0.97[EUR][1000 genomes]
rs56405528	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59574269	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60350201	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60992352	0.97[EUR][1000 genomes]
rs61193305	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6493154	0.82[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493160	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7165838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169748	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7170090	1.00[CEU][hapmap]
rs7171406	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7183382	0.83[YRI][hapmap]
rs719019	0.83[YRI][hapmap]
rs72711264	0.81[ASN][1000 genomes]
rs72711278	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72711279	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72711280	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72711283	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72711284	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72711290	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72711294	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711301	0.97[EUR][1000 genomes]
rs72713103	0.97[EUR][1000 genomes]
rs72713104	0.96[EUR][1000 genomes]
rs72713105	0.96[EUR][1000 genomes]
rs7342662	0.82[YRI][hapmap]
rs751819	0.83[YRI][hapmap]
rs8023437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8025407	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs8025600	0.83[YRI][hapmap]
rs8027324	0.84[YRI][hapmap]
rs8029509	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8040466	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8042662	0.85[YRI][hapmap]
rs8042811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9972498	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45841200-45844600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:45841800-45843600	Weak transcription	HSMM	muscle
3	chr15:45842200-45844400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:45842400-45843000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:45842400-45843600	Weak transcription	NHDF-Ad	bronchial
6	chr15:45842600-45843800	Weak transcription	Osteobl	bone
7	chr15:45842800-45843800	Weak transcription	Muscle Satellite Cultured Cells	--

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