Variant report

Variant	rs56179992
Chromosome Location	chr15:45862098-45862099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45854848..45857497-chr15:45861585..45863282,2	K562	blood:
2	chr15:45861243..45863376-chr15:45878676..45881007,2	MCF-7	breast:
3	chr15:45855485..45858418-chr15:45859997..45862944,3	K562	blood:

Variant related genes	Relation type
ENSG00000260170	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1153830	0.83[EUR][1000 genomes]
rs1153831	0.82[EUR][1000 genomes]
rs16944629	0.87[EUR][1000 genomes]
rs16945097	0.84[ASN][1000 genomes]
rs17627219	0.84[ASN][1000 genomes]
rs1768458	0.90[EUR][1000 genomes]
rs1966763	0.86[ASN][1000 genomes]
rs2088164	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2433600	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2433619	0.82[EUR][1000 genomes]
rs35828336	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4448883	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55806911	0.86[ASN][1000 genomes]
rs55997350	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56304405	0.86[ASN][1000 genomes]
rs56405528	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57291883	0.84[ASN][1000 genomes]
rs59574269	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59593563	0.86[ASN][1000 genomes]
rs60350201	0.94[EUR][1000 genomes]
rs60351453	0.84[ASN][1000 genomes]
rs60378269	0.84[ASN][1000 genomes]
rs60992352	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61193305	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61209164	0.84[ASN][1000 genomes]
rs6493154	0.90[EUR][1000 genomes]
rs6493157	0.97[EUR][1000 genomes]
rs6493158	0.97[EUR][1000 genomes]
rs6493160	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68044128	0.86[ASN][1000 genomes]
rs7164956	0.84[ASN][1000 genomes]
rs7165827	0.84[ASN][1000 genomes]
rs7165838	0.97[EUR][1000 genomes]
rs7169748	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7171406	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7173983	0.97[EUR][1000 genomes]
rs7178395	0.90[ASN][1000 genomes]
rs7178879	0.84[ASN][1000 genomes]
rs7179265	0.84[ASN][1000 genomes]
rs7179903	0.84[ASN][1000 genomes]
rs7181436	0.86[ASN][1000 genomes]
rs72711278	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72711279	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72711280	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72711283	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72711284	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72711290	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72711294	0.97[EUR][1000 genomes]
rs72711301	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713104	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713105	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713106	0.84[ASN][1000 genomes]
rs72713107	0.84[ASN][1000 genomes]
rs72713168	0.84[ASN][1000 genomes]
rs72713169	0.84[ASN][1000 genomes]
rs72713171	0.84[ASN][1000 genomes]
rs72713172	0.84[ASN][1000 genomes]
rs72713175	0.84[ASN][1000 genomes]
rs72713177	0.86[ASN][1000 genomes]
rs72713178	0.82[ASN][1000 genomes]
rs72713182	0.84[ASN][1000 genomes]
rs72713185	0.84[ASN][1000 genomes]
rs8023437	0.94[EUR][1000 genomes]
rs8025407	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029509	0.90[EUR][1000 genomes]
rs8040466	0.89[EUR][1000 genomes]
rs8041902	0.84[ASN][1000 genomes]
rs8042811	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45859200-45866400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:45862000-45862600	Enhancers	Primary B cells from peripheral blood	blood

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