Variant report

Variant	rs1966763
Chromosome Location	chr15:45883635-45883636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr15:45883635-45883831	GM12892	blood:	n/a	n/a
2	PAX5	chr15:45883516-45883796	GM12878	blood:	n/a	n/a
3	PAX5	chr15:45883544-45883791	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45878966..45881006-chr15:45882996..45885480,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200419	TF binding region
BLOC1S6	TF binding region
ENSG00000260170	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs16945097	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17627219	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55755923	0.91[EUR][1000 genomes]
rs55806911	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55913172	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55997350	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56081351	0.92[EUR][1000 genomes]
rs56179992	0.86[ASN][1000 genomes]
rs56190351	0.92[EUR][1000 genomes]
rs56259807	0.92[EUR][1000 genomes]
rs56304405	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375332	0.92[EUR][1000 genomes]
rs56395216	0.92[EUR][1000 genomes]
rs57291883	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59593563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60351453	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60378269	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60992352	0.86[ASN][1000 genomes]
rs61209164	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68044128	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164956	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7165827	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7178395	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7178879	0.98[ASN][1000 genomes]
rs7179265	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7179903	0.98[ASN][1000 genomes]
rs7181436	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711301	0.86[ASN][1000 genomes]
rs72713103	0.86[ASN][1000 genomes]
rs72713104	0.86[ASN][1000 genomes]
rs72713105	0.86[ASN][1000 genomes]
rs72713106	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713107	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713168	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713169	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713171	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713172	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713175	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713178	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713180	0.81[EUR][1000 genomes]
rs72713182	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713185	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713191	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72713197	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713199	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713201	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715003	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715005	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72715008	0.91[EUR][1000 genomes]
rs72715010	0.92[EUR][1000 genomes]
rs72715014	0.92[EUR][1000 genomes]
rs72715019	0.92[EUR][1000 genomes]
rs72715020	0.92[EUR][1000 genomes]
rs72715077	0.92[EUR][1000 genomes]
rs8025407	0.86[ASN][1000 genomes]
rs8041902	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45880200-45887000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:45880400-45887000	Weak transcription	Lung	lung
3	chr15:45880400-45900400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:45881000-45884200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:45881000-45884400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:45881000-45886200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:45881000-45886600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:45881000-45888600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:45881000-45900200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:45881000-45908600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:45881000-45908800	Weak transcription	Esophagus	oesophagus
12	chr15:45881200-45884200	Weak transcription	Fetal Thymus	thymus
13	chr15:45881200-45884400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:45881200-45884400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:45881200-45884600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:45881200-45884600	Weak transcription	Placenta	Placenta
17	chr15:45881200-45884800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:45881200-45886600	Weak transcription	Left Ventricle	heart
19	chr15:45881200-45888200	Weak transcription	Aorta	Aorta
20	chr15:45881200-45888200	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:45881200-45888200	Weak transcription	Right Ventricle	heart
22	chr15:45881200-45889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:45881200-45890200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:45881200-45895800	Weak transcription	Spleen	Spleen
25	chr15:45881200-45898000	Weak transcription	Pancreas	Pancrea
26	chr15:45881200-45899800	Weak transcription	Small Intestine	intestine
27	chr15:45881200-45900200	Weak transcription	Colonic Mucosa	Colon
28	chr15:45881200-45900200	Weak transcription	Gastric	stomach
29	chr15:45881200-45909000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:45881400-45884400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:45881400-45884600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:45881400-45884800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:45881400-45885000	Weak transcription	Fetal Stomach	stomach
34	chr15:45881400-45888200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:45881400-45898200	Weak transcription	HSMMtube	muscle
36	chr15:45881600-45885600	Weak transcription	Brain Germinal Matrix	brain
37	chr15:45881600-45901800	Weak transcription	Psoas Muscle	Psoas
38	chr15:45881800-45884000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:45881800-45884200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:45881800-45884400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:45881800-45884400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr15:45881800-45884400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr15:45881800-45884800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr15:45881800-45885000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:45881800-45886800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:45881800-45887000	Weak transcription	Thymus	Thymus
47	chr15:45881800-45887200	Weak transcription	HMEC	breast
48	chr15:45881800-45888000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:45881800-45888200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:45881800-45889000	Weak transcription	A549	lung

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