Variant report

Variant	rs55806911
Chromosome Location	chr15:45905214-45905215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45879090..45880889-chr15:45903152..45905270,2	K562	blood:
2	chr15:45750222..45752081-chr15:45903810..45905357,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260170	Chromatin interaction
ENSG00000259354	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs16945097	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17627219	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1966763	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3649	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55755923	0.91[EUR][1000 genomes]
rs55913172	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55997350	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56081351	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56179992	0.86[ASN][1000 genomes]
rs56190351	0.92[EUR][1000 genomes]
rs56259807	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56304405	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375332	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56395216	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57291883	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59593563	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60351453	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60378269	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60992352	0.86[ASN][1000 genomes]
rs61209164	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68044128	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164956	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7165827	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7178395	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7178879	0.98[ASN][1000 genomes]
rs7179265	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7179903	0.98[ASN][1000 genomes]
rs7181436	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711301	0.86[ASN][1000 genomes]
rs72713103	0.86[ASN][1000 genomes]
rs72713104	0.86[ASN][1000 genomes]
rs72713105	0.86[ASN][1000 genomes]
rs72713106	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713107	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713168	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713169	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713171	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713172	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713175	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713177	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713178	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713180	0.81[AMR][1000 genomes]
rs72713182	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713185	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713191	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72713197	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713199	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713201	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715003	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715005	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72715008	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72715010	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72715014	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72715019	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72715020	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72715077	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8025407	0.86[ASN][1000 genomes]
rs8041902	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45881000-45908600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:45881000-45908800	Weak transcription	Esophagus	oesophagus
3	chr15:45881200-45909000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:45882000-45908600	Weak transcription	NHLF	lung
5	chr15:45889600-45906600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:45889800-45905400	Weak transcription	Fetal Intestine Small	intestine
7	chr15:45889800-45908800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:45890200-45908800	Weak transcription	A549	lung
9	chr15:45896800-45912400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:45898400-45911000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:45898800-45906600	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:45898800-45906600	Weak transcription	Pancreas	Pancrea
13	chr15:45898800-45909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:45898800-45911600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:45899000-45906600	Weak transcription	HepG2	liver
16	chr15:45899400-45906800	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:45899400-45909000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:45899600-45906600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:45899600-45906800	Weak transcription	Brain Anterior Caudate	brain
20	chr15:45899600-45912400	Weak transcription	HSMMtube	muscle
21	chr15:45899800-45906600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:45900800-45908800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:45900800-45908800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:45900800-45911800	Weak transcription	Primary B cells from cord blood	blood
25	chr15:45901000-45909000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:45901600-45906600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr15:45901600-45908800	Weak transcription	HMEC	breast
28	chr15:45901600-45909400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:45901800-45908800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:45902200-45906400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:45902200-45907200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:45902200-45910200	Weak transcription	Fetal Brain Female	brain
33	chr15:45903000-45906600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:45904400-45905600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:45904600-45905600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr15:45904600-45905800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:45904800-45905600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:45904800-45905600	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr15:45904800-45905600	Enhancers	GM12878-XiMat	blood
40	chr15:45904800-45905600	Enhancers	HSMM	muscle
41	chr15:45904800-45905600	Enhancers	HUVEC	blood vessel
42	chr15:45904800-45905600	Enhancers	NH-A	brain
43	chr15:45904800-45905600	Enhancers	NHDF-Ad	bronchial
44	chr15:45904800-45905600	Enhancers	NHEK	skin
45	chr15:45904800-45905600	Enhancers	Osteobl	bone
46	chr15:45905000-45905400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:45905000-45905400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:45905000-45905600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:45905000-45905600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:45905000-45905600	Enhancers	Hela-S3	cervix

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