Variant report

Variant	rs56395216
Chromosome Location	chr15:45942430-45942431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45940658..45942644-chr15:45946028..45948330,2	MCF-7	breast:
2	chr15:45936300..45938060-chr15:45941234..45942847,2	MCF-7	breast:
3	chr15:45931592..45934146-chr15:45938709..45942844,4	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12914664	1.00[ASN][1000 genomes]
rs16945097	0.92[EUR][1000 genomes]
rs16946621	0.83[EUR][1000 genomes]
rs17627219	0.91[EUR][1000 genomes]
rs1966763	0.92[EUR][1000 genomes]
rs35053544	1.00[ASN][1000 genomes]
rs35325894	1.00[ASN][1000 genomes]
rs3649	1.00[ASN][1000 genomes]
rs55755923	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55806911	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55913172	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56081351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56190351	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56259807	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56304405	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56375332	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57291883	0.91[EUR][1000 genomes]
rs59593563	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60351453	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60378269	0.89[EUR][1000 genomes]
rs61209164	0.91[EUR][1000 genomes]
rs68044128	0.91[EUR][1000 genomes]
rs68120365	1.00[ASN][1000 genomes]
rs7164956	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7165827	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7178395	0.89[EUR][1000 genomes]
rs7179265	0.91[EUR][1000 genomes]
rs7181436	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72709092	1.00[ASN][1000 genomes]
rs72713106	0.90[EUR][1000 genomes]
rs72713107	0.91[EUR][1000 genomes]
rs72713168	0.91[EUR][1000 genomes]
rs72713169	0.91[EUR][1000 genomes]
rs72713171	0.91[EUR][1000 genomes]
rs72713172	0.91[EUR][1000 genomes]
rs72713175	0.91[EUR][1000 genomes]
rs72713177	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713178	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713180	1.00[ASN][1000 genomes]
rs72713182	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72713185	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713191	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72713197	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72713199	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72713201	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72715003	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72715005	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72715008	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715010	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715014	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715077	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715082	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8041902	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
3	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45933800-45951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:45934200-45961600	Weak transcription	Fetal Kidney	kidney
3	chr15:45934800-45945800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:45936600-45942800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr15:45937200-45945600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr15:45938400-45950400	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:45938600-45942600	Weak transcription	Fetal Stomach	stomach
8	chr15:45938600-45943000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:45938600-45951000	Weak transcription	Primary B cells from cord blood	blood
10	chr15:45938600-45952600	Weak transcription	Adipose Nuclei	Adipose
11	chr15:45938800-45945600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:45938800-45949400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:45938800-45954200	Weak transcription	Aorta	Aorta
14	chr15:45939600-45942800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr15:45939600-45942800	Enhancers	Lung	lung
16	chr15:45939800-45942600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:45940000-45942600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:45940000-45942600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr15:45940000-45942800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:45940000-45942800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:45940000-45942800	Enhancers	Liver	Liver
22	chr15:45940400-45942600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:45940400-45943800	Enhancers	Pancreas	Pancrea
24	chr15:45940600-45942800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr15:45940600-45942800	Enhancers	Stomach Mucosa	stomach
26	chr15:45940600-45942800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr15:45940800-45942600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:45940800-45942600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:45940800-45942600	Enhancers	Right Atrium	heart
30	chr15:45940800-45942800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:45940800-45942800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:45940800-45942800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr15:45940800-45943000	Enhancers	Colon Smooth Muscle	Colon
34	chr15:45941200-45942600	Enhancers	HMEC	breast
35	chr15:45941200-45945600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:45941400-45943200	Weak transcription	Spleen	Spleen
37	chr15:45941400-45944600	Weak transcription	Small Intestine	intestine
38	chr15:45941400-45945200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:45941400-45945400	Weak transcription	Psoas Muscle	Psoas
40	chr15:45941400-45945600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:45941400-45945600	Weak transcription	Left Ventricle	heart
42	chr15:45941400-45950600	Weak transcription	Primary T cells from cord blood	blood
43	chr15:45941600-45945200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr15:45941600-45945400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:45941600-45945400	Weak transcription	Right Ventricle	heart
46	chr15:45941600-45945600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:45941600-45945600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:45941600-45945600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:45941600-45949400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:45941600-45951800	Weak transcription	Thymus	Thymus

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