Variant report

Variant	rs72715082
Chromosome Location	chr15:45950523-45950524
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16946621	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55755923	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55913172	0.83[EUR][1000 genomes]
rs56081351	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56190351	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56259807	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56375332	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56395216	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7164956	0.81[EUR][1000 genomes]
rs7165827	0.81[EUR][1000 genomes]
rs72713191	0.83[EUR][1000 genomes]
rs72713197	0.83[EUR][1000 genomes]
rs72713199	0.83[EUR][1000 genomes]
rs72713201	0.83[EUR][1000 genomes]
rs72715003	0.84[EUR][1000 genomes]
rs72715005	0.84[EUR][1000 genomes]
rs72715008	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72715010	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72715014	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72715019	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72715020	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72715077	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
3	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv977055	chr15:45949717-45957214	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45933800-45951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:45934200-45961600	Weak transcription	Fetal Kidney	kidney
3	chr15:45938600-45951000	Weak transcription	Primary B cells from cord blood	blood
4	chr15:45938600-45952600	Weak transcription	Adipose Nuclei	Adipose
5	chr15:45938800-45954200	Weak transcription	Aorta	Aorta
6	chr15:45941400-45950600	Weak transcription	Primary T cells from cord blood	blood
7	chr15:45941600-45951800	Weak transcription	Thymus	Thymus
8	chr15:45941600-45952400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:45941600-45952600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:45941600-45954000	Weak transcription	Hela-S3	cervix
11	chr15:45941600-45966800	Weak transcription	NHLF	lung
12	chr15:45942200-45950800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:45942200-45951600	Weak transcription	NHEK	skin
14	chr15:45942600-45950600	Weak transcription	HMEC	breast
15	chr15:45942800-45950800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:45942800-45951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:45942800-45951800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:45942800-45952800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:45943800-45950600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:45943800-45956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:45944000-45950600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:45945600-45951200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:45945800-45951200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:45945800-45953600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:45946000-45950600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:45946000-45951200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:45946200-45950600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:45946200-45951600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr15:45946200-45952000	Weak transcription	Left Ventricle	heart
30	chr15:45946200-45952000	Weak transcription	Right Atrium	heart
31	chr15:45946200-45952200	Weak transcription	NHDF-Ad	bronchial
32	chr15:45946200-45953400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:45946200-45953600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:45946200-45953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:45946200-45954600	Weak transcription	Right Ventricle	heart
36	chr15:45946400-45951600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:45946600-45950800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:45946600-45953800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:45946800-45954000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:45947000-45951400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:45947000-45954000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:45947200-45951000	Weak transcription	Esophagus	oesophagus
43	chr15:45947200-45951000	Weak transcription	Pancreas	Pancrea
44	chr15:45947600-45950600	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr15:45947600-45962200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr15:45947600-45968200	Weak transcription	Placenta	Placenta
47	chr15:45948200-45951000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:45948200-45953200	Weak transcription	GM12878-XiMat	blood
49	chr15:45948600-45951000	Enhancers	Fetal Intestine Small	intestine
50	chr15:45949000-45950800	Enhancers	Fetal Intestine Large	intestine

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