Variant report

Variant	rs7164956
Chromosome Location	chr15:45920544-45920545
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45914454..45916102-chr15:45918794..45920610,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs16945097	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17627219	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1966763	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3649	0.86[AMR][1000 genomes]
rs55755923	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55806911	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55913172	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55997350	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56081351	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56179992	0.84[ASN][1000 genomes]
rs56190351	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56259807	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56304405	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56375332	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56395216	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57291883	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59593563	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60351453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60378269	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60992352	0.84[ASN][1000 genomes]
rs61209164	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68044128	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7165827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178395	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7178879	0.95[ASN][1000 genomes]
rs7179265	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7179903	0.95[ASN][1000 genomes]
rs7181436	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72711301	0.84[ASN][1000 genomes]
rs72713103	0.84[ASN][1000 genomes]
rs72713104	0.84[ASN][1000 genomes]
rs72713105	0.84[ASN][1000 genomes]
rs72713106	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713107	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713168	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713169	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713171	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713172	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713175	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713177	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713178	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72713180	0.86[AMR][1000 genomes]
rs72713182	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713191	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713197	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713199	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713201	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72715003	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72715005	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72715008	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72715010	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72715014	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72715019	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72715020	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72715077	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72715082	0.81[EUR][1000 genomes]
rs8025407	0.84[ASN][1000 genomes]
rs8041902	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45909600-45926600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:45909800-45923000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:45920200-45920600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:45920200-45920600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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