Variant report

Variant	rs72713169
Chromosome Location	chr15:45876644-45876645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr15:45876568-45876681	K562	blood:	n/a	n/a
2	POLR2A	chr15:45876420-45876732	Hela-S3	cervix:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:45875078..45876854-chr15:45880097..45881754,2	MCF-7	breast:
2	chr15:45813492..45816353-chr15:45876550..45880712,4	MCF-7	breast:
3	chr15:45864613..45866606-chr15:45876015..45877880,2	MCF-7	breast:
4	chr15:45813184..45816148-chr15:45875521..45877981,2	MCF-7	breast:
5	chr15:45693513..45696404-chr15:45876472..45881031,4	MCF-7	breast:

No data

Variant related genes	Relation type
BLOC1S6	TF binding region
ENSG00000260170	TF binding region
ENSG00000104154	Chromatin interaction
ENSG00000171763	Chromatin interaction
ENSG00000171766	Chromatin interaction
ENSG00000179362	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs16945097	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627219	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966763	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3649	0.84[AMR][1000 genomes]
rs55755923	0.90[EUR][1000 genomes]
rs55806911	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55913172	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55997350	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56081351	0.91[EUR][1000 genomes]
rs56179992	0.84[ASN][1000 genomes]
rs56190351	0.91[EUR][1000 genomes]
rs56259807	0.91[EUR][1000 genomes]
rs56304405	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56375332	0.91[EUR][1000 genomes]
rs56395216	0.91[EUR][1000 genomes]
rs57291883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59593563	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60351453	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60378269	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60992352	0.84[ASN][1000 genomes]
rs61209164	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68044128	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164956	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165827	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178395	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178879	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7179265	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179903	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7181436	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72711301	0.84[ASN][1000 genomes]
rs72713103	0.84[ASN][1000 genomes]
rs72713104	0.84[ASN][1000 genomes]
rs72713105	0.84[ASN][1000 genomes]
rs72713106	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713107	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713168	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713175	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713177	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713178	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72713180	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72713182	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713185	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713191	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72713197	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713199	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713201	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72715003	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72715005	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72715008	0.90[EUR][1000 genomes]
rs72715010	0.91[EUR][1000 genomes]
rs72715014	0.91[EUR][1000 genomes]
rs72715019	0.91[EUR][1000 genomes]
rs72715020	0.91[EUR][1000 genomes]
rs72715077	0.91[EUR][1000 genomes]
rs8025407	0.84[ASN][1000 genomes]
rs8041902	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45873400-45878000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:45874000-45877400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:45875400-45877400	Weak transcription	Fetal Intestine Small	intestine
4	chr15:45875400-45878600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:45875600-45876800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr15:45875600-45878000	Enhancers	K562	blood
7	chr15:45876000-45876800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr15:45876200-45878000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:45876200-45878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:45876400-45876800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:45876400-45878800	Weak transcription	Aorta	Aorta
12	chr15:45876600-45876800	Enhancers	GM12878-XiMat	blood
13	chr15:45876600-45877200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:45876600-45877800	Weak transcription	Primary B cells from cord blood	blood
15	chr15:45876600-45878000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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