Variant report

Variant	rs60378269
Chromosome Location	chr15:45872804-45872805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45871737..45874925-chr15:45877626..45879711,4	MCF-7	breast:
2	chr15:45871932..45875099-chr15:45877644..45881217,5	K562	blood:

Variant related genes	Relation type
ENSG00000104164	Chromatin interaction
ENSG00000260170	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs16945097	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627219	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966763	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3649	0.85[AMR][1000 genomes]
rs55755923	0.87[EUR][1000 genomes]
rs55806911	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55913172	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55997350	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56081351	0.89[EUR][1000 genomes]
rs56179992	0.84[ASN][1000 genomes]
rs56190351	0.89[EUR][1000 genomes]
rs56259807	0.89[EUR][1000 genomes]
rs56304405	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56375332	0.89[EUR][1000 genomes]
rs56395216	0.89[EUR][1000 genomes]
rs57291883	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59593563	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60351453	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60992352	0.84[ASN][1000 genomes]
rs61209164	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68044128	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164956	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165827	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178395	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178879	1.00[ASN][1000 genomes]
rs7179265	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179903	1.00[ASN][1000 genomes]
rs7181436	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72711301	0.84[ASN][1000 genomes]
rs72713103	0.84[ASN][1000 genomes]
rs72713104	0.84[ASN][1000 genomes]
rs72713105	0.84[ASN][1000 genomes]
rs72713106	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713107	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713168	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713169	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713171	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713172	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713175	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713177	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713178	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72713180	0.85[AMR][1000 genomes]
rs72713182	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713185	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713191	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72713197	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713199	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713201	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72715003	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72715005	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72715008	0.90[EUR][1000 genomes]
rs72715010	0.89[EUR][1000 genomes]
rs72715014	0.89[EUR][1000 genomes]
rs72715019	0.89[EUR][1000 genomes]
rs72715020	0.89[EUR][1000 genomes]
rs72715077	0.89[EUR][1000 genomes]
rs8025407	0.84[ASN][1000 genomes]
rs8041902	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45866200-45876400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:45871600-45875600	Weak transcription	K562	blood
3	chr15:45872400-45875400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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