Variant report

Variant	rs72715003
Chromosome Location	chr15:45940670-45940671
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45940658..45942644-chr15:45946028..45948330,2	MCF-7	breast:
2	chr15:45934455..45936874-chr15:45938212..45940753,2	MCF-7	breast:
3	chr15:45927181..45929961-chr15:45939240..45941307,2	MCF-7	breast:
4	chr15:45931592..45934146-chr15:45938709..45942844,4	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs16945097	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16946621	0.81[EUR][1000 genomes]
rs17627219	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1966763	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55755923	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55806911	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55913172	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56081351	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56190351	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56259807	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56304405	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56375332	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56395216	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57291883	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59593563	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60351453	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60378269	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61209164	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68044128	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164956	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7165827	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7178395	0.90[EUR][1000 genomes]
rs7178879	0.82[ASN][1000 genomes]
rs7179265	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7179903	0.82[ASN][1000 genomes]
rs7181436	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713106	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713107	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713168	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713169	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713171	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713172	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713175	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72713177	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713178	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72713182	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713185	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713191	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72713197	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713199	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713201	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715005	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72715008	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72715010	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72715014	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72715019	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72715020	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72715077	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72715082	0.84[EUR][1000 genomes]
rs8041902	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv526945	chr15:45935755-45941689	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45930400-45940800	Weak transcription	Fetal Thymus	thymus
2	chr15:45930600-45940800	Weak transcription	Thymus	Thymus
3	chr15:45933800-45951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:45934200-45961600	Weak transcription	Fetal Kidney	kidney
5	chr15:45934800-45945800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:45936600-45942800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:45937200-45945600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr15:45937400-45940800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:45937800-45940800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:45938000-45940800	Weak transcription	Primary T cells from cord blood	blood
11	chr15:45938000-45940800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:45938000-45940800	Weak transcription	Hela-S3	cervix
13	chr15:45938400-45940800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:45938400-45950400	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:45938600-45940800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:45938600-45940800	Weak transcription	Esophagus	oesophagus
17	chr15:45938600-45940800	Weak transcription	Left Ventricle	heart
18	chr15:45938600-45940800	Weak transcription	Psoas Muscle	Psoas
19	chr15:45938600-45940800	Weak transcription	Right Atrium	heart
20	chr15:45938600-45940800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:45938600-45940800	Weak transcription	Spleen	Spleen
22	chr15:45938600-45940800	Weak transcription	NH-A	brain
23	chr15:45938600-45942000	Weak transcription	Gastric	stomach
24	chr15:45938600-45942600	Weak transcription	Fetal Stomach	stomach
25	chr15:45938600-45943000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:45938600-45951000	Weak transcription	Primary B cells from cord blood	blood
27	chr15:45938600-45952600	Weak transcription	Adipose Nuclei	Adipose
28	chr15:45938800-45940800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:45938800-45940800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr15:45938800-45940800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:45938800-45940800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:45938800-45940800	Weak transcription	Small Intestine	intestine
33	chr15:45938800-45940800	Enhancers	A549	lung
34	chr15:45938800-45940800	Weak transcription	HSMM	muscle
35	chr15:45938800-45940800	Weak transcription	NHLF	lung
36	chr15:45938800-45941000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:45938800-45941000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr15:45938800-45942400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:45938800-45945600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:45938800-45949400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:45938800-45954200	Weak transcription	Aorta	Aorta
42	chr15:45939000-45940800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr15:45939000-45940800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:45939000-45940800	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:45939000-45940800	Weak transcription	HSMMtube	muscle
46	chr15:45939400-45940800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:45939400-45940800	Weak transcription	Osteobl	bone
48	chr15:45939600-45940800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:45939600-45940800	Weak transcription	Colonic Mucosa	Colon
50	chr15:45939600-45942800	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links