Variant report
Variant | rs7179903 |
---|---|
Chromosome Location | chr15:45873752-45873753 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000104164 | Chromatin interaction |
ENSG00000260170 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs16945097 | 1.00[ASN][1000 genomes] |
rs17627219 | 1.00[ASN][1000 genomes] |
rs1966763 | 0.98[ASN][1000 genomes] |
rs55806911 | 0.98[ASN][1000 genomes] |
rs55913172 | 0.82[ASN][1000 genomes] |
rs55997350 | 0.84[ASN][1000 genomes] |
rs56179992 | 0.84[ASN][1000 genomes] |
rs56304405 | 0.98[ASN][1000 genomes] |
rs57291883 | 1.00[ASN][1000 genomes] |
rs59593563 | 0.98[ASN][1000 genomes] |
rs60351453 | 0.95[ASN][1000 genomes] |
rs60378269 | 1.00[ASN][1000 genomes] |
rs60992352 | 0.84[ASN][1000 genomes] |
rs61209164 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs68044128 | 0.98[ASN][1000 genomes] |
rs7164956 | 0.95[ASN][1000 genomes] |
rs7165827 | 0.95[ASN][1000 genomes] |
rs7178395 | 0.93[ASN][1000 genomes] |
rs7178879 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7179265 | 1.00[ASN][1000 genomes] |
rs7181436 | 0.98[ASN][1000 genomes] |
rs72711301 | 0.84[ASN][1000 genomes] |
rs72713103 | 0.84[ASN][1000 genomes] |
rs72713104 | 0.84[ASN][1000 genomes] |
rs72713105 | 0.84[ASN][1000 genomes] |
rs72713106 | 1.00[ASN][1000 genomes] |
rs72713107 | 1.00[ASN][1000 genomes] |
rs72713168 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72713169 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72713171 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72713172 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72713175 | 1.00[ASN][1000 genomes] |
rs72713177 | 0.98[ASN][1000 genomes] |
rs72713178 | 0.93[ASN][1000 genomes] |
rs72713182 | 0.95[ASN][1000 genomes] |
rs72713185 | 0.95[ASN][1000 genomes] |
rs72713191 | 0.91[ASN][1000 genomes] |
rs72713197 | 0.82[ASN][1000 genomes] |
rs72713199 | 0.82[ASN][1000 genomes] |
rs72713201 | 0.82[ASN][1000 genomes] |
rs72715003 | 0.82[ASN][1000 genomes] |
rs72715005 | 0.81[ASN][1000 genomes] |
rs8025407 | 0.84[ASN][1000 genomes] |
rs8041902 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1045556 | chr15:45777396-45884854 | Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
2 | nsv904188 | chr15:45801035-45941689 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
3 | nsv904189 | chr15:45821158-46298458 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:45866200-45876400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr15:45871600-45875600 | Weak transcription | K562 | blood |
3 | chr15:45872400-45875400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
4 | chr15:45873400-45878000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |