Variant report

Variant	rs6493160
Chromosome Location	chr15:45864572-45864573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45862339..45865241-chr15:45879104..45881459,2	K562	blood:

Variant related genes	Relation type
ENSG00000260170	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1153830	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1153831	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16944629	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1768458	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2088164	0.88[EUR][1000 genomes]
rs2433600	0.81[EUR][1000 genomes]
rs2433617	0.81[AMR][1000 genomes]
rs2433619	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35828336	0.90[EUR][1000 genomes]
rs4448883	0.97[EUR][1000 genomes]
rs55997350	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56179992	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56405528	0.97[EUR][1000 genomes]
rs59574269	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60350201	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60992352	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61193305	0.90[EUR][1000 genomes]
rs6493154	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6493157	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6493158	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7165838	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7169748	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171406	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72711278	0.90[EUR][1000 genomes]
rs72711279	0.90[EUR][1000 genomes]
rs72711280	0.90[EUR][1000 genomes]
rs72711283	0.90[EUR][1000 genomes]
rs72711284	0.94[EUR][1000 genomes]
rs72711290	0.94[EUR][1000 genomes]
rs72711294	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72711301	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713103	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713104	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713105	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8023437	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8025407	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8029509	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8040466	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8042811	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45859200-45866400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:45864000-45865400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:45864000-45865600	Enhancers	Primary B cells from cord blood	blood
4	chr15:45864200-45864600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr15:45864400-45865000	Enhancers	Primary hematopoietic stem cells	blood
6	chr15:45864400-45865000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:45864400-45865200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:45864400-45866000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:45864400-45866400	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links