Variant report

Variant	rs72719803
Chromosome Location	chr4:149805677-149805678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10021663	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1357440	0.82[ASN][1000 genomes]
rs1474304	0.84[ASN][1000 genomes]
rs1523012	0.84[ASN][1000 genomes]
rs1523013	0.82[ASN][1000 genomes]
rs1523014	0.82[ASN][1000 genomes]
rs1523015	0.82[ASN][1000 genomes]
rs1523016	0.82[ASN][1000 genomes]
rs1523017	0.82[ASN][1000 genomes]
rs1634070	0.82[ASN][1000 genomes]
rs1634071	0.82[ASN][1000 genomes]
rs1634082	0.84[ASN][1000 genomes]
rs1634083	0.84[ASN][1000 genomes]
rs1634097	0.84[ASN][1000 genomes]
rs1719678	0.84[ASN][1000 genomes]
rs1719683	0.84[ASN][1000 genomes]
rs1719684	0.84[ASN][1000 genomes]
rs17623254	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2358680	0.84[ASN][1000 genomes]
rs2520496	0.84[ASN][1000 genomes]
rs4240352	0.82[ASN][1000 genomes]
rs4835147	0.84[ASN][1000 genomes]
rs4835549	0.81[ASN][1000 genomes]
rs58528421	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535645	0.82[ASN][1000 genomes]
rs6846355	0.84[ASN][1000 genomes]
rs6858768	0.84[ASN][1000 genomes]
rs72737816	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7668071	0.84[ASN][1000 genomes]
rs7682891	0.84[ASN][1000 genomes]
rs853695	0.82[ASN][1000 genomes]
rs853705	0.84[ASN][1000 genomes]
rs853707	0.87[ASN][1000 genomes]
rs853708	0.86[ASN][1000 genomes]
rs853709	0.84[ASN][1000 genomes]
rs853728	0.84[ASN][1000 genomes]
rs853730	0.84[ASN][1000 genomes]
rs853731	0.84[ASN][1000 genomes]
rs860501	0.84[ASN][1000 genomes]
rs860502	0.86[ASN][1000 genomes]
rs860503	0.87[ASN][1000 genomes]
rs861225	0.81[ASN][1000 genomes]
rs862655	0.84[ASN][1000 genomes]
rs862656	0.84[ASN][1000 genomes]
rs864093	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149804200-149805800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:149804800-149806200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:149805600-149805800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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