Variant report

Variant	rs1719678
Chromosome Location	chr4:149821435-149821436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10021663	0.91[ASN][1000 genomes]
rs13127141	0.86[ASN][1000 genomes]
rs1357440	0.91[ASN][1000 genomes]
rs1403455	0.86[ASN][1000 genomes]
rs1474304	0.93[ASN][1000 genomes]
rs1523012	0.92[ASN][1000 genomes]
rs1523013	0.91[ASN][1000 genomes]
rs1523014	0.91[ASN][1000 genomes]
rs1523015	0.91[ASN][1000 genomes]
rs1523016	0.91[ASN][1000 genomes]
rs1523017	0.91[ASN][1000 genomes]
rs1634070	0.91[ASN][1000 genomes]
rs1634071	0.91[ASN][1000 genomes]
rs1634082	0.93[ASN][1000 genomes]
rs1634083	0.93[ASN][1000 genomes]
rs1634097	0.98[ASN][1000 genomes]
rs1719683	0.92[ASN][1000 genomes]
rs1719684	0.93[ASN][1000 genomes]
rs17584189	0.87[ASN][1000 genomes]
rs17721605	0.88[ASN][1000 genomes]
rs1916243	0.87[ASN][1000 genomes]
rs2103065	0.87[ASN][1000 genomes]
rs2358680	0.98[ASN][1000 genomes]
rs2520496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240350	0.85[ASN][1000 genomes]
rs4240351	0.86[ASN][1000 genomes]
rs4240352	0.97[ASN][1000 genomes]
rs471967	0.80[ASN][1000 genomes]
rs4835147	0.98[ASN][1000 genomes]
rs4835546	0.87[ASN][1000 genomes]
rs4835549	0.95[ASN][1000 genomes]
rs538951	0.85[ASN][1000 genomes]
rs540810	0.83[ASN][1000 genomes]
rs541498	0.86[ASN][1000 genomes]
rs58528421	0.81[ASN][1000 genomes]
rs6535645	0.96[ASN][1000 genomes]
rs6828358	0.86[ASN][1000 genomes]
rs6846355	0.98[ASN][1000 genomes]
rs6858768	0.98[ASN][1000 genomes]
rs72719803	0.84[ASN][1000 genomes]
rs7668071	0.98[ASN][1000 genomes]
rs7682891	0.98[ASN][1000 genomes]
rs7695802	0.87[ASN][1000 genomes]
rs7697941	0.88[ASN][1000 genomes]
rs853695	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853705	0.93[ASN][1000 genomes]
rs853707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs853708	0.98[ASN][1000 genomes]
rs853709	0.93[ASN][1000 genomes]
rs853728	0.98[ASN][1000 genomes]
rs853730	0.98[ASN][1000 genomes]
rs853731	0.98[ASN][1000 genomes]
rs860501	0.93[ASN][1000 genomes]
rs860502	0.95[ASN][1000 genomes]
rs860503	0.95[ASN][1000 genomes]
rs861225	0.90[ASN][1000 genomes]
rs862655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862658	0.87[ASN][1000 genomes]
rs864093	0.98[ASN][1000 genomes]
rs9307850	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149819600-149822200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:149819600-149822200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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