Variant report

Variant	rs1523016
Chromosome Location	chr4:149775198-149775199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10021663	0.84[ASN][1000 genomes]
rs13127141	0.93[ASN][1000 genomes]
rs1357440	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403455	0.95[ASN][1000 genomes]
rs1474304	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1523012	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1523013	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523014	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523015	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523017	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523018	0.80[AFR][1000 genomes]
rs1634070	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1634071	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1634082	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1634083	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1634097	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1719678	0.91[ASN][1000 genomes]
rs1719683	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1719684	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17584189	0.94[ASN][1000 genomes]
rs17623254	0.83[ASN][1000 genomes]
rs17721605	0.95[ASN][1000 genomes]
rs1916243	0.94[ASN][1000 genomes]
rs2103065	0.94[ASN][1000 genomes]
rs2358680	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2520496	0.91[ASN][1000 genomes]
rs4240350	0.92[ASN][1000 genomes]
rs4240351	0.95[ASN][1000 genomes]
rs4240352	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs471967	0.87[ASN][1000 genomes]
rs4835147	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4835546	0.94[ASN][1000 genomes]
rs4835549	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs538951	0.92[ASN][1000 genomes]
rs540810	0.90[ASN][1000 genomes]
rs541498	0.93[ASN][1000 genomes]
rs552274	0.88[ASN][1000 genomes]
rs58528421	0.85[ASN][1000 genomes]
rs6535645	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6828358	0.93[ASN][1000 genomes]
rs6846355	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6858768	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72719803	0.82[ASN][1000 genomes]
rs7668071	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7682891	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7695802	0.94[ASN][1000 genomes]
rs7697941	0.95[ASN][1000 genomes]
rs853695	0.89[ASN][1000 genomes]
rs853705	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853707	0.94[ASN][1000 genomes]
rs853708	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs853709	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs853728	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs853730	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs853731	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs860501	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs860502	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs860503	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs861225	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs862655	0.91[ASN][1000 genomes]
rs862656	0.91[ASN][1000 genomes]
rs862658	0.94[ASN][1000 genomes]
rs864093	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307850	0.95[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149759200-149775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:149772600-149775400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:149773400-149775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:149773800-149775400	Weak transcription	NHEK	skin
5	chr4:149773800-149775600	Weak transcription	Psoas Muscle	Psoas
6	chr4:149774200-149775400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:149774200-149775400	Weak transcription	HUVEC	blood vessel
8	chr4:149775000-149775400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links