Variant report

Variant	rs7272053
Chromosome Location	chr20:24768398-24768399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs55760035	0.81[AMR][1000 genomes]
rs58684827	0.81[AMR][1000 genomes]
rs59252648	0.81[AMR][1000 genomes]
rs59901088	0.81[AMR][1000 genomes]
rs60531117	0.81[AMR][1000 genomes]
rs61350955	0.81[AMR][1000 genomes]
rs7270151	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7272507	0.81[AMR][1000 genomes]
rs7274081	0.81[AMR][1000 genomes]
rs73903587	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73903589	0.81[AMR][1000 genomes]
rs73903916	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73903917	0.81[AMR][1000 genomes]
rs73903918	0.81[AMR][1000 genomes]
rs73903919	0.81[AMR][1000 genomes]
rs73903920	0.81[AMR][1000 genomes]
rs73903921	0.81[AMR][1000 genomes]
rs73903922	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73903923	0.81[AMR][1000 genomes]
rs73903924	0.81[AMR][1000 genomes]
rs73903926	0.81[AMR][1000 genomes]
rs73903927	0.81[AMR][1000 genomes]
rs73903929	0.81[AMR][1000 genomes]
rs73903930	0.81[AMR][1000 genomes]
rs73903931	0.81[AMR][1000 genomes]
rs73903932	0.81[AMR][1000 genomes]
rs73903933	0.81[AMR][1000 genomes]
rs73903934	0.81[AMR][1000 genomes]
rs73903935	0.81[AMR][1000 genomes]
rs73903936	0.81[AMR][1000 genomes]
rs73903937	0.81[AMR][1000 genomes]
rs73903938	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73903939	0.81[AMR][1000 genomes]
rs73903940	0.81[AMR][1000 genomes]
rs73903942	0.81[AMR][1000 genomes]
rs73903944	0.81[AMR][1000 genomes]
rs73903945	0.81[AMR][1000 genomes]
rs73903946	0.81[AMR][1000 genomes]
rs73903948	0.81[AMR][1000 genomes]
rs73903950	0.81[AMR][1000 genomes]
rs73903969	0.91[AMR][1000 genomes]
rs73903971	0.91[AMR][1000 genomes]
rs73903972	0.91[AMR][1000 genomes]
rs73903974	0.91[AMR][1000 genomes]
rs73903977	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1059270	chr20:24741923-24787243	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24764000-24770000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24764600-24770000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr20:24766600-24769800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr20:24767000-24770000	Weak transcription	Lung	lung
5	chr20:24767000-24770600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:24767400-24772400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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