Variant report
Variant | rs73903977 |
---|---|
Chromosome Location | chr20:24787604-24787605 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:24786455..24788540-chr20:24788618..24791423,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11908480 | 0.89[AFR][1000 genomes] |
rs55760035 | 0.90[AMR][1000 genomes] |
rs58684827 | 0.90[AMR][1000 genomes] |
rs59252648 | 0.90[AMR][1000 genomes] |
rs59901088 | 0.90[AMR][1000 genomes] |
rs60531117 | 0.90[AMR][1000 genomes] |
rs61350955 | 0.90[AMR][1000 genomes] |
rs7262621 | 0.91[AFR][1000 genomes] |
rs7262640 | 0.91[AFR][1000 genomes] |
rs7270151 | 0.90[AMR][1000 genomes] |
rs7272053 | 0.91[AMR][1000 genomes] |
rs7272507 | 0.90[AMR][1000 genomes] |
rs7274081 | 0.90[AMR][1000 genomes] |
rs73903587 | 0.90[AMR][1000 genomes] |
rs73903589 | 0.90[AMR][1000 genomes] |
rs73903916 | 0.90[AMR][1000 genomes] |
rs73903917 | 0.90[AMR][1000 genomes] |
rs73903918 | 0.90[AMR][1000 genomes] |
rs73903919 | 0.90[AMR][1000 genomes] |
rs73903920 | 0.90[AMR][1000 genomes] |
rs73903921 | 0.90[AMR][1000 genomes] |
rs73903922 | 0.90[AMR][1000 genomes] |
rs73903923 | 0.90[AMR][1000 genomes] |
rs73903924 | 0.90[AMR][1000 genomes] |
rs73903926 | 0.90[AMR][1000 genomes] |
rs73903927 | 0.90[AMR][1000 genomes] |
rs73903929 | 0.90[AMR][1000 genomes] |
rs73903930 | 0.90[AMR][1000 genomes] |
rs73903931 | 0.90[AMR][1000 genomes] |
rs73903932 | 0.90[AMR][1000 genomes] |
rs73903933 | 0.90[AMR][1000 genomes] |
rs73903934 | 0.90[AMR][1000 genomes] |
rs73903935 | 0.90[AMR][1000 genomes] |
rs73903936 | 0.90[AMR][1000 genomes] |
rs73903937 | 0.90[AMR][1000 genomes] |
rs73903938 | 0.90[AMR][1000 genomes] |
rs73903939 | 0.90[AMR][1000 genomes] |
rs73903940 | 0.90[AMR][1000 genomes] |
rs73903942 | 0.90[AMR][1000 genomes] |
rs73903944 | 0.90[AMR][1000 genomes] |
rs73903945 | 0.90[AMR][1000 genomes] |
rs73903946 | 0.90[AMR][1000 genomes] |
rs73903948 | 0.90[AMR][1000 genomes] |
rs73903950 | 0.90[AMR][1000 genomes] |
rs73903961 | 0.91[AFR][1000 genomes] |
rs73903963 | 0.91[AFR][1000 genomes] |
rs73903968 | 0.90[AFR][1000 genomes] |
rs73903969 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73903971 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73903972 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73903974 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3332519 | chr20:24535099-24815615 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1061412 | chr20:24629468-24887869 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv544216 | chr20:24629468-24887869 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1061281 | chr20:24711635-24815107 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv544217 | chr20:24711635-24815107 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv912825 | chr20:24715544-24813345 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv1061455 | chr20:24733120-24861801 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv544218 | chr20:24733120-24861801 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:24777200-24791400 | Weak transcription | Spleen | Spleen |
2 | chr20:24783200-24790400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr20:24786800-24788200 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
4 | chr20:24787400-24788200 | Enhancers | Fetal Lung | lung |
5 | chr20:24787400-24788200 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
6 | chr20:24787600-24788200 | Enhancers | Fetal Muscle Leg | muscle |