Variant report

Variant	rs72725272
Chromosome Location	chr1:172424405-172424406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2901654	0.89[EUR][1000 genomes]
rs72723302	0.89[EUR][1000 genomes]
rs72725208	0.89[EUR][1000 genomes]
rs72725210	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72725271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72725279	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947449	chr1:172419586-172424910	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172419600-172426000	Enhancers	Fetal Intestine Large	intestine
2	chr1:172420200-172426000	Enhancers	Fetal Intestine Small	intestine
3	chr1:172420400-172425400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:172422400-172426800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:172423200-172425000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:172423200-172429000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:172423200-172429200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
10	chr1:172423600-172432000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:172424000-172424800	Enhancers	Fetal Muscle Leg	muscle
12	chr1:172424000-172425400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:172424400-172425000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:172424400-172425800	Enhancers	K562	blood
15	chr1:172424400-172426400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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