Variant report

Variant	rs2901654
Chromosome Location	chr1:172391056-172391057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs17278379	0.82[AFR][1000 genomes]
rs72723302	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72725208	1.00[EUR][1000 genomes]
rs72725210	0.93[EUR][1000 genomes]
rs72725268	0.83[EUR][1000 genomes]
rs72725271	0.89[EUR][1000 genomes]
rs72725272	0.89[EUR][1000 genomes]

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172384400-172398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:172385000-172391600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:172385800-172411000	Weak transcription	Fetal Stomach	stomach
5	chr1:172386000-172391200	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:172386800-172391200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:172387200-172392200	Enhancers	Primary T cells from cord blood	blood
8	chr1:172387600-172392400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172387600-172392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:172388600-172392200	Weak transcription	NHEK	skin
11	chr1:172388800-172392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172388800-172392200	Weak transcription	HMEC	breast
13	chr1:172389800-172391400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:172390000-172391400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr1:172390200-172391200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:172390200-172391800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr1:172390400-172391200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:172390400-172395600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:172390600-172391200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:172390600-172391200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr1:172390600-172391400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:172390600-172391600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:172390600-172395600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:172390800-172391200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr1:172390800-172391400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr1:172390800-172391400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr1:172390800-172391400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr1:172390800-172391600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr1:172390800-172391800	Enhancers	Brain Anterior Caudate	brain
30	chr1:172390800-172392000	Enhancers	Brain Cingulate Gyrus	brain
31	chr1:172390800-172392000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr1:172390800-172392000	Enhancers	Brain Substantia Nigra	brain
33	chr1:172390800-172392200	Enhancers	Brain Hippocampus Middle	brain
34	chr1:172390800-172392200	Enhancers	Psoas Muscle	Psoas
35	chr1:172391000-172391200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr1:172391000-172391200	Enhancers	K562	blood
37	chr1:172391000-172391400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr1:172391000-172391400	Enhancers	Adipose Nuclei	Adipose
39	chr1:172391000-172391400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr1:172391000-172391600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:172391000-172391600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr1:172391000-172391600	Enhancers	Fetal Heart	heart
43	chr1:172391000-172391600	Enhancers	Fetal Muscle Leg	muscle
44	chr1:172391000-172391600	Enhancers	Fetal Thymus	thymus
45	chr1:172391000-172391600	Enhancers	Right Ventricle	heart
46	chr1:172391000-172391800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:172391000-172391800	Enhancers	Fetal Lung	lung
48	chr1:172391000-172392200	Enhancers	Left Ventricle	heart
49	chr1:172391000-172410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:172391000-172412200	Weak transcription	HSMMtube	muscle

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