Variant report

Variant	rs72723302
Chromosome Location	chr1:172389295-172389296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172381987..172384677-chr1:172388260..172389798,2	K562	blood:

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction

rs_ID	r²[population]
rs16844417	0.82[AFR][1000 genomes]
rs17278379	0.86[AFR][1000 genomes]
rs2901654	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72725208	1.00[EUR][1000 genomes]
rs72725210	0.93[EUR][1000 genomes]
rs72725268	0.83[EUR][1000 genomes]
rs72725271	0.89[EUR][1000 genomes]
rs72725272	0.89[EUR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:172373000-172390800	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:172373000-172390800	Weak transcription	Brain Substantia Nigra	brain
4	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:172382200-172390800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:172384400-172398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:172385000-172391600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:172385800-172391000	Weak transcription	Fetal Lung	lung
9	chr1:172385800-172411000	Weak transcription	Fetal Stomach	stomach
10	chr1:172386000-172391200	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:172386800-172390800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:172386800-172390800	Weak transcription	Psoas Muscle	Psoas
13	chr1:172386800-172391200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:172387000-172389800	Weak transcription	Fetal Thymus	thymus
15	chr1:172387200-172390800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:172387200-172390800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:172387200-172392200	Enhancers	Primary T cells from cord blood	blood
18	chr1:172387400-172389800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:172387400-172390600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:172387400-172390600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:172387400-172391000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:172387600-172389800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:172387600-172392400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:172387600-172392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:172388600-172392200	Weak transcription	NHEK	skin
26	chr1:172388800-172390200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:172388800-172392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:172388800-172392200	Weak transcription	HMEC	breast
29	chr1:172389000-172390600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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