Variant report

Variant	rs17278379
Chromosome Location	chr1:172381284-172381285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1009802	1.00[CHD][hapmap]
rs16844417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17277372	1.00[CHD][hapmap]
rs2213738	1.00[CHD][hapmap]
rs2901654	0.82[AFR][1000 genomes]
rs4244193	1.00[CHD][hapmap]
rs4244194	1.00[CHD][hapmap]
rs4916187	1.00[CHD][hapmap]
rs72723302	0.86[AFR][1000 genomes]
rs739249	1.00[CHD][hapmap]
rs7515895	1.00[CHD][hapmap]
rs7518300	1.00[CHD][hapmap]
rs7522692	1.00[CHD][hapmap]
rs7538417	1.00[CHD][hapmap]
rs7551242	1.00[CHD][hapmap]
rs9425330	1.00[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17278379	VAMP4	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
2	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:172370200-172385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:172372800-172381600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:172373000-172390800	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:172373000-172390800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:172373000-172411800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:172375400-172383600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172377200-172384400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:172378400-172385200	Weak transcription	Fetal Kidney	kidney
11	chr1:172378600-172382800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172379400-172383600	Weak transcription	NHDF-Ad	bronchial
13	chr1:172379400-172386600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:172379600-172383200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:172380800-172381400	Enhancers	GM12878-XiMat	blood
16	chr1:172381200-172381800	Enhancers	NHEK	skin
17	chr1:172381200-172383000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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