Variant report

Variant	rs1009802
Chromosome Location	chr1:172449599-172449600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172444678..172448407-chr1:172449595..172452783,4	MCF-7	breast:
2	chr1:172448573..172451341-chr1:172458163..172460914,3	K562	blood:
3	chr1:172448523..172450358-chr1:172453507..172455135,2	K562	blood:
4	chr1:172448419..172451395-chr1:172454966..172457854,2	MCF-7	breast:
5	chr1:172444366..172446246-chr1:172448282..172450692,2	K562	blood:
6	chr1:172445706..172447652-chr1:172448722..172450346,2	MCF-7	breast:
7	chr1:172443532..172455037-chr1:172498094..172506505,15	MCF-7	breast:
8	chr1:172448573..172451341-chr1:172458163..172460914,2	K562	blood:
9	chr1:172448493..172450937-chr1:172451011..172455135,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1041911	0.98[EUR][1000 genomes]
rs10911792	0.91[CEU][hapmap]
rs16844417	1.00[CHD][hapmap]
rs17278379	1.00[CHD][hapmap]
rs2032528	0.86[CEU][hapmap];0.88[TSI][hapmap]
rs2213738	1.00[CHD][hapmap];0.83[YRI][hapmap]
rs4244193	1.00[CHD][hapmap]
rs4244194	1.00[CHD][hapmap]
rs4916187	1.00[CHD][hapmap]
rs4916263	0.91[CEU][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap]
rs4916264	0.91[CEU][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap]
rs4916265	0.91[CEU][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs6656400	0.95[CEU][hapmap];1.00[GIH][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71485882	0.90[EUR][1000 genomes]
rs739249	1.00[CHD][hapmap]
rs7515895	1.00[CHD][hapmap]
rs7518300	1.00[CHD][hapmap]
rs7522692	1.00[CHD][hapmap]
rs7538417	1.00[CHD][hapmap]
rs7551242	0.91[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9425330	1.00[CHD][hapmap];0.82[YRI][hapmap]
rs9425332	0.93[EUR][1000 genomes]
rs9425333	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425623	0.94[CEU][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425625	1.00[CEU][hapmap];0.95[GIH][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9425628	0.91[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172444200-172456200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:172445000-172452400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:172445600-172449800	Weak transcription	HepG2	liver
4	chr1:172445800-172450800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:172445800-172451000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:172445800-172451600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:172446800-172451000	Weak transcription	A549	lung
8	chr1:172447600-172452800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:172447800-172449800	Enhancers	Placenta	Placenta
10	chr1:172447800-172449800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:172448200-172452600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:172448200-172452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:172448400-172449600	Enhancers	K562	blood
14	chr1:172448400-172452800	Weak transcription	HMEC	breast
15	chr1:172448600-172453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:172448600-172453200	Weak transcription	NHEK	skin
17	chr1:172449000-172449800	Enhancers	Right Atrium	heart
18	chr1:172449200-172449600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:172449200-172449600	Enhancers	Adipose Nuclei	Adipose
20	chr1:172449200-172449600	Enhancers	Fetal Muscle Leg	muscle
21	chr1:172449200-172449800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:172449200-172449800	Enhancers	Colon Smooth Muscle	Colon
23	chr1:172449200-172449800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr1:172449200-172450000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:172449200-172450000	Enhancers	Fetal Thymus	thymus
26	chr1:172449200-172450400	Enhancers	Dnd41	blood
27	chr1:172449400-172450000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr1:172449400-172450200	Enhancers	Primary T cells from cord blood	blood

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