Variant report

Variant	rs9425628
Chromosome Location	chr1:172451442-172451443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1009802	0.91[CEU][hapmap]
rs1009803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011731	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1023479	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10489284	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10752944	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10911654	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10911684	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10911792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894633	0.88[CHB][hapmap]
rs2001129	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2032528	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213731	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2213732	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2227198	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2227199	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2301453	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3213564	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3768445	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4471302	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4504922	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs4916251	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4916262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5029889	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5029891	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6424894	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6656400	0.87[CEU][hapmap]
rs6676665	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6698987	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs714515	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7518039	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7539972	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7551242	0.82[CEU][hapmap]
rs9286854	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9425291	0.88[CHB][hapmap]
rs9425301	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9425333	0.89[CEU][hapmap]
rs9425586	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9425592	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9425623	0.83[CEU][hapmap]
rs9425625	0.91[CEU][hapmap]
rs9425627	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979935	0.89[CHB][hapmap]
rs991790	0.90[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172444200-172456200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:172445000-172452400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:172445800-172451600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:172447600-172452800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:172448200-172452600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172448200-172452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:172448400-172452800	Weak transcription	HMEC	breast
8	chr1:172448600-172453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:172448600-172453200	Weak transcription	NHEK	skin
10	chr1:172449800-172451600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:172449800-172453000	Weak transcription	Placenta	Placenta
12	chr1:172450000-172452800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:172450200-172456200	Weak transcription	Primary T cells from cord blood	blood
14	chr1:172450800-172451600	Enhancers	HepG2	liver
15	chr1:172450800-172452600	Enhancers	Fetal Intestine Large	intestine
16	chr1:172450800-172456400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:172451000-172451600	Enhancers	A549	lung
18	chr1:172451000-172452000	Enhancers	Fetal Intestine Small	intestine

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