Variant report

Variant	rs2213731
Chromosome Location	chr1:172359815-172359816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1011731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1023479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10752943	0.92[ASN][1000 genomes]
rs10752944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10797996	0.93[ASN][1000 genomes]
rs10911654	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10911681	0.98[ASN][1000 genomes]
rs10911684	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10911792	0.91[CHB][hapmap]
rs12404665	0.93[ASN][1000 genomes]
rs12405515	0.87[ASN][1000 genomes]
rs1894633	0.89[CHB][hapmap]
rs2001127	0.97[ASN][1000 genomes]
rs2001128	0.97[ASN][1000 genomes]
rs2001129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2032528	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2213732	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2227198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2227199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2227200	0.92[ASN][1000 genomes]
rs2269612	0.93[ASN][1000 genomes]
rs2301453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3213564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3768445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4504922	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4916251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916252	0.93[ASN][1000 genomes]
rs4916253	0.97[ASN][1000 genomes]
rs4916254	0.89[ASN][1000 genomes]
rs4916263	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4916264	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4916265	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6424894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6676665	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6698987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6700575	0.98[ASN][1000 genomes]
rs714515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs73046851	0.80[ASN][1000 genomes]
rs7517737	0.90[ASN][1000 genomes]
rs7518039	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7534393	0.80[CHB][hapmap]
rs7539464	0.97[ASN][1000 genomes]
rs7539972	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7544610	1.00[ASN][1000 genomes]
rs7546252	0.97[ASN][1000 genomes]
rs9286854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425269	1.00[JPT][hapmap]
rs9425291	0.89[CHB][hapmap]
rs9425297	0.95[ASN][1000 genomes]
rs9425298	0.97[ASN][1000 genomes]
rs9425299	0.97[ASN][1000 genomes]
rs9425300	0.97[ASN][1000 genomes]
rs9425301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9425575	0.80[ASN][1000 genomes]
rs9425579	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9425586	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425587	0.93[ASN][1000 genomes]
rs9425589	0.93[ASN][1000 genomes]
rs9425590	0.94[ASN][1000 genomes]
rs9425591	0.97[ASN][1000 genomes]
rs9425592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425628	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs979935	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs991790	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172346600-172367400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:172349600-172362000	Weak transcription	Left Ventricle	heart
3	chr1:172349800-172363400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:172350400-172362400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr1:172350400-172362600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:172351400-172363000	Weak transcription	A549	lung
7	chr1:172351800-172363400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:172352200-172360000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:172352200-172363200	Weak transcription	Fetal Intestine Large	intestine
10	chr1:172352400-172360000	Weak transcription	Primary T cells from cord blood	blood
11	chr1:172352400-172360000	Weak transcription	Small Intestine	intestine
12	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
13	chr1:172353000-172362600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:172353600-172360000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:172353600-172366400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:172354600-172364000	Weak transcription	Fetal Brain Female	brain
17	chr1:172355000-172363800	Weak transcription	Lung	lung
18	chr1:172355600-172364000	Weak transcription	Fetal Brain Male	brain
19	chr1:172356600-172367400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:172358800-172361400	Enhancers	Fetal Muscle Leg	muscle
21	chr1:172359000-172360000	Enhancers	HepG2	liver
22	chr1:172359000-172360400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:172359000-172360400	Enhancers	Brain Cingulate Gyrus	brain
24	chr1:172359000-172360400	Enhancers	Fetal Heart	heart
25	chr1:172359000-172361000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:172359000-172361000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr1:172359200-172360000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:172359200-172360000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr1:172359200-172360400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:172359200-172360600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr1:172359200-172360800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:172359200-172360800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr1:172359400-172360000	Enhancers	Aorta	Aorta
34	chr1:172359400-172360000	Enhancers	Brain Anterior Caudate	brain
35	chr1:172359400-172360000	Enhancers	Osteobl	bone
36	chr1:172359400-172360200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:172359400-172360200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr1:172359400-172360200	Genic enhancers	Brain Inferior Temporal Lobe	brain
39	chr1:172359400-172360200	Enhancers	Esophagus	oesophagus
40	chr1:172359400-172360200	Flanking Active TSS	Fetal Kidney	kidney
41	chr1:172359400-172360200	Enhancers	Fetal Lung	lung
42	chr1:172359400-172360200	Enhancers	Placenta	Placenta
43	chr1:172359400-172360200	Enhancers	Gastric	stomach
44	chr1:172359400-172360200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr1:172359400-172360200	Enhancers	Spleen	Spleen
46	chr1:172359400-172360200	Enhancers	HSMM	muscle
47	chr1:172359400-172360400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr1:172359400-172360400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:172359400-172360400	Enhancers	Fetal Thymus	thymus
50	chr1:172359400-172360400	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links