Variant report

Variant	rs6676665
Chromosome Location	chr1:172346174-172346175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172345890..172347639-chr1:172350448..172352485,2	MCF-7	breast:
2	chr1:172345198..172346938-chr1:172350887..172353536,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1011731	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1023479	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489284	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10752943	0.92[ASN][1000 genomes]
rs10752944	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10797996	0.94[ASN][1000 genomes]
rs10911654	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10911681	0.92[ASN][1000 genomes]
rs10911684	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10911792	0.90[CHB][hapmap]
rs12404665	0.94[ASN][1000 genomes]
rs12405515	0.87[ASN][1000 genomes]
rs1894633	0.89[CHB][hapmap]
rs2001127	0.90[ASN][1000 genomes]
rs2001128	0.90[ASN][1000 genomes]
rs2001129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2032528	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2213731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2213732	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2227198	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2227199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2227200	0.92[ASN][1000 genomes]
rs2269612	0.94[ASN][1000 genomes]
rs2301453	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3213564	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3768445	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4471302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4504922	0.94[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4916251	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916252	0.94[ASN][1000 genomes]
rs4916253	0.90[ASN][1000 genomes]
rs4916254	0.83[ASN][1000 genomes]
rs4916263	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs4916264	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs4916265	0.90[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs6424894	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6698987	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6700575	0.92[ASN][1000 genomes]
rs714515	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73046851	0.81[ASN][1000 genomes]
rs7517737	0.90[ASN][1000 genomes]
rs7518039	0.94[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7539464	0.90[ASN][1000 genomes]
rs7539972	0.94[ASW][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.97[MKK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7544610	0.93[ASN][1000 genomes]
rs7546252	0.90[ASN][1000 genomes]
rs9286854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9425269	1.00[JPT][hapmap]
rs9425291	0.89[CHB][hapmap]
rs9425297	0.89[ASN][1000 genomes]
rs9425298	0.90[ASN][1000 genomes]
rs9425299	0.90[ASN][1000 genomes]
rs9425300	0.90[ASN][1000 genomes]
rs9425301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9425575	0.81[ASN][1000 genomes]
rs9425579	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9425586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425587	0.94[ASN][1000 genomes]
rs9425589	0.94[ASN][1000 genomes]
rs9425590	0.87[ASN][1000 genomes]
rs9425591	0.90[ASN][1000 genomes]
rs9425592	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9425628	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs979935	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs991790	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172331200-172347200	Weak transcription	Fetal Kidney	kidney
2	chr1:172343400-172346200	Enhancers	Primary T cells from cord blood	blood
3	chr1:172343600-172349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:172343600-172352200	Weak transcription	HSMM	muscle
5	chr1:172343600-172359800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:172344000-172346200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:172344400-172346200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:172344400-172346400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:172344600-172346200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:172344600-172348800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:172344600-172349600	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:172344800-172347000	Weak transcription	Brain Substantia Nigra	brain
13	chr1:172344800-172352400	Weak transcription	Brain Anterior Caudate	brain
14	chr1:172344800-172357800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:172344800-172359000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:172345600-172346200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:172345600-172346200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:172345600-172346200	Enhancers	NHEK	skin
19	chr1:172345600-172346600	Enhancers	Primary B cells from cord blood	blood
20	chr1:172345600-172350200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:172345800-172346400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:172345800-172347200	Weak transcription	NHDF-Ad	bronchial
23	chr1:172345800-172348600	Weak transcription	Fetal Lung	lung
24	chr1:172345800-172349400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr1:172345800-172351200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:172345800-172352200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:172346000-172346200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:172346000-172348200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:172346000-172348400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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