Variant report

Variant	rs9425579
Chromosome Location	chr1:172337092-172337093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172319437..172321373-chr1:172335961..172338137,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1011731	0.95[ASN][1000 genomes]
rs1023479	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10489284	0.93[ASN][1000 genomes]
rs10752943	0.94[ASN][1000 genomes]
rs10752944	0.92[ASN][1000 genomes]
rs10797996	0.95[ASN][1000 genomes]
rs10911654	0.98[ASN][1000 genomes]
rs10911681	0.93[ASN][1000 genomes]
rs10911684	0.95[ASN][1000 genomes]
rs12404665	0.95[ASN][1000 genomes]
rs12405515	0.89[ASN][1000 genomes]
rs1894633	0.80[ASN][1000 genomes]
rs2001127	0.92[ASN][1000 genomes]
rs2001128	0.92[ASN][1000 genomes]
rs2001129	0.94[ASN][1000 genomes]
rs2213731	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2213732	0.95[ASN][1000 genomes]
rs2227198	0.92[ASN][1000 genomes]
rs2227199	0.92[ASN][1000 genomes]
rs2227200	0.94[ASN][1000 genomes]
rs2269612	0.95[ASN][1000 genomes]
rs2301453	0.95[ASN][1000 genomes]
rs3213564	0.98[ASN][1000 genomes]
rs3768445	0.95[ASN][1000 genomes]
rs4471302	0.93[ASN][1000 genomes]
rs4504922	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916251	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4916252	0.95[ASN][1000 genomes]
rs4916253	0.92[ASN][1000 genomes]
rs4916254	0.85[ASN][1000 genomes]
rs6424894	0.95[ASN][1000 genomes]
rs6676665	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6698987	0.93[ASN][1000 genomes]
rs6700575	0.93[ASN][1000 genomes]
rs714515	0.95[ASN][1000 genomes]
rs73046851	0.82[ASN][1000 genomes]
rs7517737	0.95[ASN][1000 genomes]
rs7518039	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7539464	0.92[ASN][1000 genomes]
rs7539972	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544610	0.95[ASN][1000 genomes]
rs7546252	0.92[ASN][1000 genomes]
rs9286854	0.92[ASN][1000 genomes]
rs9425297	0.90[ASN][1000 genomes]
rs9425298	0.92[ASN][1000 genomes]
rs9425299	0.92[ASN][1000 genomes]
rs9425300	0.92[ASN][1000 genomes]
rs9425301	0.93[ASN][1000 genomes]
rs9425573	0.80[ASN][1000 genomes]
rs9425575	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9425586	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9425587	0.95[ASN][1000 genomes]
rs9425589	0.95[ASN][1000 genomes]
rs9425590	0.89[ASN][1000 genomes]
rs9425591	0.92[ASN][1000 genomes]
rs9425592	0.92[ASN][1000 genomes]
rs979935	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs991790	0.95[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172330400-172343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172331200-172347200	Weak transcription	Fetal Kidney	kidney
3	chr1:172334800-172338600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:172336600-172337200	Active TSS	Colon Smooth Muscle	Colon

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