The 2.0 version of rSNPBase

Variant report

Variant rs7544610
Chromosome Location chr1:172365717-172365718
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
3 chr1:172353600-172366400 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:172356600-172367400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:172360000-172368200 Weak transcription HepG2 liver
6 chr1:172360200-172368600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:172360200-172369200 Weak transcription Spleen Spleen
8 chr1:172360600-172369000 Weak transcription Fetal Muscle Trunk muscle
9 chr1:172360600-172369200 Weak transcription Small Intestine intestine
10 chr1:172361400-172368400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:172361600-172366600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr1:172362400-172369200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:172362600-172368200 Enhancers Brain Cingulate Gyrus brain
14 chr1:172362800-172367400 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr1:172362800-172368600 Weak transcription Left Ventricle heart
16 chr1:172363600-172367800 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr1:172363600-172368600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr1:172363800-172366200 Weak transcription Stomach Smooth Muscle stomach
19 chr1:172363800-172366400 Weak transcription Fetal Heart heart
20 chr1:172363800-172366600 Weak transcription HSMM muscle
21 chr1:172363800-172367200 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr1:172363800-172367200 Weak transcription HSMMtube muscle
23 chr1:172363800-172367600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:172363800-172368400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:172363800-172368400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:172363800-172368600 Weak transcription Right Ventricle heart
27 chr1:172363800-172369200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:172364000-172366200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:172364000-172366200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:172364000-172366200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:172364000-172366200 Weak transcription Rectal Smooth Muscle rectum
32 chr1:172364000-172366200 Weak transcription HUVEC blood vessel
33 chr1:172364000-172366200 Weak transcription NHDF-Ad bronchial
34 chr1:172364000-172366400 Weak transcription Brain Substantia Nigra brain
35 chr1:172364000-172366400 Weak transcription NHEK skin
36 chr1:172364000-172367200 Weak transcription Fetal Lung lung
37 chr1:172364000-172367200 Weak transcription Fetal Stomach stomach
38 chr1:172364000-172367400 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:172364000-172367400 Enhancers GM12878-XiMat blood
40 chr1:172364000-172367600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:172364000-172368000 Weak transcription Placenta Amnion Placenta Amnion
42 chr1:172364000-172368200 Weak transcription Adipose Nuclei Adipose
43 chr1:172364000-172368400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:172364000-172368400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:172364000-172368400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr1:172364000-172368400 Weak transcription Fetal Muscle Leg muscle
47 chr1:172364000-172368600 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr1:172364000-172368600 Weak transcription Fetal Thymus thymus
49 chr1:172364000-172369200 Weak transcription Placenta Placenta
50 chr1:172364200-172366200 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015