The 2.0 version of rSNPBase

Variant report

Variant rs9425587
Chromosome Location chr1:172351809-172351810
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172343600-172352200 Weak transcription HSMM muscle
2 chr1:172343600-172359800 Weak transcription Brain Angular Gyrus brain
3 chr1:172344800-172352400 Weak transcription Brain Anterior Caudate brain
4 chr1:172344800-172357800 Weak transcription Brain Inferior Temporal Lobe brain
5 chr1:172344800-172359000 Weak transcription Brain Cingulate Gyrus brain
6 chr1:172345800-172352200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
8 chr1:172347400-172357600 Weak transcription Brain Substantia Nigra brain
9 chr1:172348600-172353600 Enhancers Fetal Lung lung
10 chr1:172349600-172352200 Enhancers Colon Smooth Muscle Colon
11 chr1:172349600-172353600 Enhancers Fetal Stomach stomach
12 chr1:172349600-172353800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr1:172349600-172356400 Enhancers Fetal Kidney kidney
14 chr1:172349600-172362000 Weak transcription Left Ventricle heart
15 chr1:172349800-172353600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:172349800-172353800 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr1:172349800-172353800 Enhancers HUES64 Cell Line embryonic stem cell
18 chr1:172349800-172363400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr1:172350000-172354000 Enhancers Fetal Muscle Leg muscle
20 chr1:172350200-172352200 Weak transcription Osteobl bone
21 chr1:172350200-172353800 Enhancers HUES48 Cell Line embryonic stem cell
22 chr1:172350400-172352000 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:172350400-172352000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:172350400-172352000 Weak transcription Muscle Satellite Cultured Cells --
25 chr1:172350400-172352000 Weak transcription NH-A brain
26 chr1:172350400-172352200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:172350400-172352600 Enhancers HUVEC blood vessel
28 chr1:172350400-172353000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:172350400-172353200 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:172350400-172353800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:172350400-172354400 Weak transcription Thymus Thymus
32 chr1:172350400-172357600 Weak transcription Brain Hippocampus Middle brain
33 chr1:172350400-172359400 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr1:172350400-172362400 Weak transcription Primary T cells fromperipheralblood blood
35 chr1:172350400-172362600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:172350600-172352600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:172350800-172352200 Enhancers Fetal Intestine Large intestine
38 chr1:172350800-172354200 Enhancers Fetal Adrenal Gland Adrenal Gland
39 chr1:172351000-172352200 Enhancers Rectal Smooth Muscle rectum
40 chr1:172351000-172352400 Enhancers Primary T cells from cord blood blood
41 chr1:172351000-172352800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:172351000-172353000 Active TSS Aorta Aorta
43 chr1:172351000-172353600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:172351000-172353600 Enhancers Cortex derived primary cultured neurospheres brain
45 chr1:172351000-172354000 Enhancers iPS-18 Cell Line embryonic stem cell
46 chr1:172351200-172352200 Weak transcription Small Intestine intestine
47 chr1:172351200-172352200 Enhancers NHDF-Ad bronchial
48 chr1:172351200-172352400 Weak transcription NHLF lung
49 chr1:172351200-172354000 Enhancers Placenta Amnion Placenta Amnion
50 chr1:172351200-172354200 Enhancers iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015