The 2.0 version of rSNPBase

Variant report

Variant rs4916254
Chromosome Location chr1:172364012-172364013
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
3 chr1:172353600-172366400 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:172356600-172367400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:172360000-172368200 Weak transcription HepG2 liver
6 chr1:172360200-172364200 Enhancers Fetal Kidney kidney
7 chr1:172360200-172368600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr1:172360200-172369200 Weak transcription Spleen Spleen
9 chr1:172360600-172369000 Weak transcription Fetal Muscle Trunk muscle
10 chr1:172360600-172369200 Weak transcription Small Intestine intestine
11 chr1:172360800-172365400 Enhancers Primary B cells from peripheral blood blood
12 chr1:172361400-172368400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:172361600-172366600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:172361800-172364200 Enhancers Brain Angular Gyrus brain
15 chr1:172362000-172364200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:172362000-172364200 Enhancers Brain Anterior Caudate brain
17 chr1:172362000-172364600 Enhancers Primary Natural Killer cells fromperipheralblood blood
18 chr1:172362200-172364200 Enhancers Primary hematopoietic stem cells short term culture blood
19 chr1:172362400-172364400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:172362400-172365000 Enhancers Primary T cells fromperipheralblood blood
21 chr1:172362400-172369200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:172362600-172364200 Enhancers Duodenum Smooth Muscle Duodenum
23 chr1:172362600-172368200 Enhancers Brain Cingulate Gyrus brain
24 chr1:172362800-172367400 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:172362800-172368600 Weak transcription Left Ventricle heart
26 chr1:172363000-172364200 Flanking Active TSS Primary T cells from cord blood blood
27 chr1:172363200-172364200 Enhancers ES-WA7 Cell Line embryonic stem cell
28 chr1:172363200-172364200 Enhancers iPS-15b Cell Line embryonic stem cell
29 chr1:172363200-172364200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:172363200-172364200 Enhancers Muscle Satellite Cultured Cells --
31 chr1:172363200-172364400 Enhancers ES-I3 Cell Line embryonic stem cell
32 chr1:172363200-172364400 Enhancers Fetal Intestine Large intestine
33 chr1:172363200-172365200 Enhancers HUES64 Cell Line embryonic stem cell
34 chr1:172363200-172365400 Enhancers iPS-18 Cell Line embryonic stem cell
35 chr1:172363400-172364200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
36 chr1:172363400-172364200 Enhancers Colonic Mucosa Colon
37 chr1:172363400-172365200 Enhancers H1 Cell Line embryonic stem cell
38 chr1:172363400-172365400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr1:172363600-172364200 Enhancers Osteobl bone
40 chr1:172363600-172364400 Enhancers Colon Smooth Muscle Colon
41 chr1:172363600-172364400 Enhancers Fetal Intestine Small intestine
42 chr1:172363600-172367800 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:172363600-172368600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:172363800-172364200 Enhancers Brain Hippocampus Middle brain
45 chr1:172363800-172364200 Enhancers Brain Inferior Temporal Lobe brain
46 chr1:172363800-172364200 Enhancers Duodenum Mucosa Duodenum
47 chr1:172363800-172364400 Enhancers Primary hematopoietic stem cells blood
48 chr1:172363800-172364400 Enhancers Primary T helper 17 cells PMA-I stimulated --
49 chr1:172363800-172364400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:172363800-172364600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015