The 2.0 version of rSNPBase

Variant report

Variant rs7546252
Chromosome Location chr1:172368310-172368311
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
2 chr1:172360200-172368600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:172360200-172369200 Weak transcription Spleen Spleen
4 chr1:172360600-172369000 Weak transcription Fetal Muscle Trunk muscle
5 chr1:172360600-172369200 Weak transcription Small Intestine intestine
6 chr1:172361400-172368400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr1:172362400-172369200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:172362800-172368600 Weak transcription Left Ventricle heart
9 chr1:172363600-172368600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr1:172363800-172368400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:172363800-172368400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:172363800-172368600 Weak transcription Right Ventricle heart
13 chr1:172363800-172369200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:172364000-172368400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr1:172364000-172368400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr1:172364000-172368400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr1:172364000-172368400 Weak transcription Fetal Muscle Leg muscle
18 chr1:172364000-172368600 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr1:172364000-172368600 Weak transcription Fetal Thymus thymus
20 chr1:172364000-172369200 Weak transcription Placenta Placenta
21 chr1:172364200-172368400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr1:172364200-172368400 Weak transcription Duodenum Mucosa Duodenum
23 chr1:172364400-172368400 Weak transcription Primary hematopoietic stem cells blood
24 chr1:172364400-172368400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:172364400-172368600 Weak transcription Fetal Intestine Large intestine
26 chr1:172364600-172368400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr1:172365000-172368400 Weak transcription Primary T cells fromperipheralblood blood
28 chr1:172365000-172368600 Weak transcription Fetal Brain Female brain
29 chr1:172365400-172368400 Weak transcription iPS-15b Cell Line embryonic stem cell
30 chr1:172365600-172368600 Weak transcription Fetal Brain Male brain
31 chr1:172365800-172370000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:172366200-172368400 Enhancers Colon Smooth Muscle Colon
33 chr1:172366200-172369200 Enhancers HUVEC blood vessel
34 chr1:172366200-172369600 Enhancers Brain Angular Gyrus brain
35 chr1:172366200-172369800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:172366200-172370200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:172366200-172370200 Enhancers NH-A brain
38 chr1:172366400-172368400 Enhancers Brain Substantia Nigra brain
39 chr1:172366400-172369200 Enhancers Fetal Heart heart
40 chr1:172366400-172369400 Enhancers HMEC breast
41 chr1:172366400-172369600 Enhancers Cortex derived primary cultured neurospheres brain
42 chr1:172366600-172369600 Enhancers HSMM muscle
43 chr1:172366800-172371200 Enhancers Rectal Smooth Muscle rectum
44 chr1:172367000-172368400 Enhancers Primary T helper cells fromperipheralblood blood
45 chr1:172367000-172369600 Enhancers Primary B cells from peripheral blood blood
46 chr1:172367000-172370600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
47 chr1:172367000-172372800 Enhancers Primary T cells from cord blood blood
48 chr1:172367200-172368400 Enhancers Primary B cells from cord blood blood
49 chr1:172367200-172368400 Enhancers Fetal Kidney kidney
50 chr1:172367200-172369800 Enhancers Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015