The 2.0 version of rSNPBase

Variant report

Variant rs7539464
Chromosome Location chr1:172359576-172359577
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172343600-172359800 Weak transcription Brain Angular Gyrus brain
2 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr1:172349600-172362000 Weak transcription Left Ventricle heart
4 chr1:172349800-172363400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:172350400-172362400 Weak transcription Primary T cells fromperipheralblood blood
6 chr1:172350400-172362600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr1:172351400-172363000 Weak transcription A549 lung
8 chr1:172351800-172363400 Weak transcription H9 Cell Line embryonic stem cell
9 chr1:172352200-172360000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:172352200-172363200 Weak transcription Fetal Intestine Large intestine
11 chr1:172352400-172360000 Weak transcription Primary T cells from cord blood blood
12 chr1:172352400-172360000 Weak transcription Small Intestine intestine
13 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
14 chr1:172353000-172362600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr1:172353600-172359600 Weak transcription Colon Smooth Muscle Colon
16 chr1:172353600-172359800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr1:172353600-172360000 Weak transcription Stomach Smooth Muscle stomach
18 chr1:172353600-172366400 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:172354600-172359800 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:172354600-172364000 Weak transcription Fetal Brain Female brain
21 chr1:172355000-172363800 Weak transcription Lung lung
22 chr1:172355600-172364000 Weak transcription Fetal Brain Male brain
23 chr1:172356600-172367400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:172358200-172359600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:172358600-172359600 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr1:172358800-172359800 Enhancers Primary B cells from peripheral blood blood
27 chr1:172358800-172359800 Enhancers Placenta Amnion Placenta Amnion
28 chr1:172358800-172361400 Enhancers Fetal Muscle Leg muscle
29 chr1:172359000-172359600 Enhancers HSMMtube muscle
30 chr1:172359000-172359800 Enhancers Primary B cells from cord blood blood
31 chr1:172359000-172360000 Enhancers HepG2 liver
32 chr1:172359000-172360400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:172359000-172360400 Enhancers Brain Cingulate Gyrus brain
34 chr1:172359000-172360400 Enhancers Fetal Heart heart
35 chr1:172359000-172361000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:172359000-172361000 Enhancers Fetal Adrenal Gland Adrenal Gland
37 chr1:172359200-172359600 Genic enhancers Brain Hippocampus Middle brain
38 chr1:172359200-172359600 Genic enhancers Brain Substantia Nigra brain
39 chr1:172359200-172359800 Weak transcription ES-WA7 Cell Line embryonic stem cell
40 chr1:172359200-172359800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:172359200-172360000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:172359200-172360000 Enhancers Duodenum Smooth Muscle Duodenum
43 chr1:172359200-172360400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:172359200-172360600 Enhancers Primary T helper cells PMA-I stimulated --
45 chr1:172359200-172360800 Enhancers ES-I3 Cell Line embryonic stem cell
46 chr1:172359200-172360800 Enhancers HUES64 Cell Line embryonic stem cell
47 chr1:172359400-172359600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr1:172359400-172359600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
49 chr1:172359400-172359600 ZNF genes & repeats Fetal Intestine Small intestine
50 chr1:172359400-172359800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015