The 2.0 version of rSNPBase

Variant report

Variant rs12405515
Chromosome Location chr1:172357441-172357442
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172343600-172359800 Weak transcription Brain Angular Gyrus brain
2 chr1:172344800-172357800 Weak transcription Brain Inferior Temporal Lobe brain
3 chr1:172344800-172359000 Weak transcription Brain Cingulate Gyrus brain
4 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr1:172347400-172357600 Weak transcription Brain Substantia Nigra brain
6 chr1:172349600-172362000 Weak transcription Left Ventricle heart
7 chr1:172349800-172363400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr1:172350400-172357600 Weak transcription Brain Hippocampus Middle brain
9 chr1:172350400-172359400 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr1:172350400-172362400 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:172350400-172362600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr1:172351400-172357800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:172351400-172363000 Weak transcription A549 lung
14 chr1:172351800-172359400 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:172351800-172363400 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:172352200-172359400 Weak transcription Fetal Muscle Trunk muscle
17 chr1:172352200-172360000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:172352200-172363200 Weak transcription Fetal Intestine Large intestine
19 chr1:172352400-172359400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:172352400-172360000 Weak transcription Primary T cells from cord blood blood
21 chr1:172352400-172360000 Weak transcription Small Intestine intestine
22 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
23 chr1:172352800-172359400 Weak transcription Brain Anterior Caudate brain
24 chr1:172353000-172359400 Weak transcription Aorta Aorta
25 chr1:172353000-172362600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:172353600-172359000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:172353600-172359200 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:172353600-172359400 Weak transcription Fetal Lung lung
29 chr1:172353600-172359400 Weak transcription Fetal Stomach stomach
30 chr1:172353600-172359400 Weak transcription Rectal Smooth Muscle rectum
31 chr1:172353600-172359600 Weak transcription Colon Smooth Muscle Colon
32 chr1:172353600-172359800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:172353600-172360000 Weak transcription Stomach Smooth Muscle stomach
34 chr1:172353600-172366400 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr1:172353800-172359000 Weak transcription ES-WA7 Cell Line embryonic stem cell
36 chr1:172353800-172359000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr1:172353800-172359000 Weak transcription Fetal Heart heart
38 chr1:172353800-172359000 Weak transcription HSMMtube muscle
39 chr1:172353800-172359200 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr1:172353800-172359200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:172353800-172359200 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr1:172353800-172359200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:172353800-172359200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:172353800-172359400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:172353800-172359400 Weak transcription Muscle Satellite Cultured Cells --
46 chr1:172353800-172359400 Weak transcription Ovary ovary
47 chr1:172354000-172358800 Weak transcription Placenta Amnion Placenta Amnion
48 chr1:172354000-172359400 Weak transcription NHDF-Ad bronchial
49 chr1:172354200-172359400 Weak transcription iPS-15b Cell Line embryonic stem cell
50 chr1:172354600-172358800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015