The 2.0 version of rSNPBase

Variant report

Variant rs6424894
Chromosome Location chr1:172365330-172365331
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172346600-172367400 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
3 chr1:172353600-172366400 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:172356600-172367400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:172360000-172368200 Weak transcription HepG2 liver
6 chr1:172360200-172368600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:172360200-172369200 Weak transcription Spleen Spleen
8 chr1:172360600-172369000 Weak transcription Fetal Muscle Trunk muscle
9 chr1:172360600-172369200 Weak transcription Small Intestine intestine
10 chr1:172360800-172365400 Enhancers Primary B cells from peripheral blood blood
11 chr1:172361400-172368400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:172361600-172366600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr1:172362400-172369200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:172362600-172368200 Enhancers Brain Cingulate Gyrus brain
15 chr1:172362800-172367400 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr1:172362800-172368600 Weak transcription Left Ventricle heart
17 chr1:172363200-172365400 Enhancers iPS-18 Cell Line embryonic stem cell
18 chr1:172363400-172365400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
19 chr1:172363600-172367800 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr1:172363600-172368600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr1:172363800-172365400 Enhancers Primary B cells from cord blood blood
22 chr1:172363800-172365600 Enhancers Primary T helper cells fromperipheralblood blood
23 chr1:172363800-172366200 Weak transcription Stomach Smooth Muscle stomach
24 chr1:172363800-172366400 Weak transcription Fetal Heart heart
25 chr1:172363800-172366600 Weak transcription HSMM muscle
26 chr1:172363800-172367200 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr1:172363800-172367200 Weak transcription HSMMtube muscle
28 chr1:172363800-172367600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:172363800-172368400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:172363800-172368400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:172363800-172368600 Weak transcription Right Ventricle heart
32 chr1:172363800-172369200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:172364000-172365600 Enhancers Fetal Brain Male brain
34 chr1:172364000-172366200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:172364000-172366200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:172364000-172366200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:172364000-172366200 Weak transcription Rectal Smooth Muscle rectum
38 chr1:172364000-172366200 Weak transcription HUVEC blood vessel
39 chr1:172364000-172366200 Weak transcription NHDF-Ad bronchial
40 chr1:172364000-172366400 Weak transcription Brain Substantia Nigra brain
41 chr1:172364000-172366400 Weak transcription NHEK skin
42 chr1:172364000-172367200 Weak transcription Fetal Lung lung
43 chr1:172364000-172367200 Weak transcription Fetal Stomach stomach
44 chr1:172364000-172367400 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr1:172364000-172367400 Enhancers GM12878-XiMat blood
46 chr1:172364000-172367600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:172364000-172368000 Weak transcription Placenta Amnion Placenta Amnion
48 chr1:172364000-172368200 Weak transcription Adipose Nuclei Adipose
49 chr1:172364000-172368400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr1:172364000-172368400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015