Variant report

Variant	rs9425269
Chromosome Location	chr1:172248058-172248059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172247437..172249233-chr1:172327614..172329827,2	MCF-7	breast:
2	chr1:172223524..172225386-chr1:172246377..172249330,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1011731	1.00[JPT][hapmap]
rs1023479	1.00[JPT][hapmap]
rs10489284	1.00[JPT][hapmap]
rs10752923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10752944	1.00[JPT][hapmap]
rs10911684	1.00[JPT][hapmap]
rs12096225	0.91[ASN][1000 genomes]
rs12097276	0.88[ASN][1000 genomes]
rs2001129	1.00[JPT][hapmap]
rs2213731	1.00[JPT][hapmap]
rs2227198	1.00[JPT][hapmap]
rs2227199	1.00[JPT][hapmap]
rs2251991	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2254703	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254720	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254810	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255076	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255460	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255707	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2256059	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2301453	1.00[JPT][hapmap]
rs2422076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422077	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2586390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586395	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2586396	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2586398	1.00[CEU][hapmap];0.91[ASN][1000 genomes]
rs2586399	0.85[ASN][1000 genomes]
rs2586400	0.91[ASN][1000 genomes]
rs2586402	0.91[ASN][1000 genomes]
rs2586405	0.91[ASN][1000 genomes]
rs2586406	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2586409	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2586414	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2586417	0.91[ASN][1000 genomes]
rs2586418	0.91[ASN][1000 genomes]
rs2586419	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2586422	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2586423	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2586425	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2586426	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757485	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2757486	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2757487	0.91[ASN][1000 genomes]
rs2757488	0.91[ASN][1000 genomes]
rs2757489	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2757490	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2757491	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2757492	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2757497	0.91[ASN][1000 genomes]
rs2757498	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2757499	0.91[ASN][1000 genomes]
rs2757500	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2757501	0.88[ASN][1000 genomes]
rs2757502	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2757505	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757506	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3213564	1.00[JPT][hapmap]
rs3768445	1.00[JPT][hapmap]
rs4471302	1.00[JPT][hapmap]
rs4504922	1.00[JPT][hapmap]
rs4916251	1.00[JPT][hapmap]
rs61807830	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61807832	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6424867	0.91[ASN][1000 genomes]
rs6424894	1.00[JPT][hapmap]
rs6676665	1.00[JPT][hapmap]
rs6677550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698987	1.00[JPT][hapmap]
rs6702094	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs714515	1.00[JPT][hapmap]
rs73044902	0.91[ASN][1000 genomes]
rs74124018	0.91[ASN][1000 genomes]
rs7518039	1.00[JPT][hapmap]
rs7539972	1.00[JPT][hapmap]
rs9286854	1.00[JPT][hapmap]
rs9425271	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9425284	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9425285	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9425301	1.00[JPT][hapmap]
rs9425544	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9425586	1.00[JPT][hapmap]
rs9425592	1.00[JPT][hapmap]
rs9633302	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991790	1.00[JPT][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172239000-172262000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:172246000-172249600	Enhancers	NHDF-Ad	bronchial
3	chr1:172246200-172249200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:172246200-172249400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:172246200-172249400	Enhancers	NH-A	brain
6	chr1:172246400-172248200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:172246400-172249600	Enhancers	Osteobl	bone
8	chr1:172246600-172248200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172246600-172249200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:172247000-172248200	Enhancers	Fetal Lung	lung
11	chr1:172247000-172248400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:172247000-172249400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:172247200-172248200	Enhancers	Rectal Smooth Muscle	rectum
14	chr1:172247200-172249200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:172247200-172249400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:172247200-172249400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:172247200-172249800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:172247400-172248200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:172247400-172248200	Enhancers	Fetal Intestine Small	intestine
20	chr1:172247400-172248400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:172247400-172248400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:172247400-172248800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr1:172247400-172249000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr1:172247600-172248200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:172247600-172248200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr1:172247600-172248200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:172247600-172248200	Enhancers	Aorta	Aorta
28	chr1:172247600-172248200	Enhancers	Stomach Smooth Muscle	stomach
29	chr1:172247600-172248200	Enhancers	HSMM	muscle
30	chr1:172247600-172248800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr1:172247600-172249200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr1:172247600-172249400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr1:172247800-172248200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:172247800-172248200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:172247800-172248200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:172247800-172248200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr1:172247800-172248200	Enhancers	NHLF	lung
38	chr1:172247800-172255800	Weak transcription	Left Ventricle	heart
39	chr1:172247800-172256000	Weak transcription	Brain Angular Gyrus	brain
40	chr1:172248000-172248200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr1:172248000-172248200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:172248000-172249000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:172248000-172249200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr1:172248000-172253600	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links