Variant report

Variant	rs2586417
Chromosome Location	chr1:172271278-172271279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10752923	0.91[ASN][1000 genomes]
rs12096225	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12097276	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2251991	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254703	0.91[ASN][1000 genomes]
rs2254720	0.91[ASN][1000 genomes]
rs2254810	0.91[ASN][1000 genomes]
rs2255076	0.91[ASN][1000 genomes]
rs2255460	0.91[ASN][1000 genomes]
rs2255707	0.97[ASN][1000 genomes]
rs2256059	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422076	0.91[ASN][1000 genomes]
rs2422077	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586390	0.91[ASN][1000 genomes]
rs2586395	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586396	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586398	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586399	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2586400	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586402	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586405	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586406	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586414	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586419	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586422	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586423	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2586425	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586426	0.91[ASN][1000 genomes]
rs2757485	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757486	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757487	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757488	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757489	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757490	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757491	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757492	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757497	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757498	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757500	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757501	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2757505	0.91[ASN][1000 genomes]
rs2757506	0.97[ASN][1000 genomes]
rs61807830	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61807832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424867	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677550	0.91[ASN][1000 genomes]
rs6702094	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73044902	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74124018	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425269	0.91[ASN][1000 genomes]
rs9425271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425284	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425285	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425544	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425552	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9633302	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:172267800-172271400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:172267800-172272800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:172269000-172273200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:172271000-172271800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:172271000-172271800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:172271000-172271800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:172271200-172271600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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