Variant report

Variant	rs2757506
Chromosome Location	chr1:172253585-172253586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172253395..172255527-chr1:172290385..172292894,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10752923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12096225	0.97[ASN][1000 genomes]
rs12097276	0.94[ASN][1000 genomes]
rs2251991	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2254703	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254720	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254810	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255076	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255460	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255707	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256059	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2422076	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2422077	0.97[ASN][1000 genomes]
rs2586390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2586395	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586396	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586398	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs2586399	0.91[ASN][1000 genomes]
rs2586400	0.97[ASN][1000 genomes]
rs2586402	0.97[ASN][1000 genomes]
rs2586405	0.97[ASN][1000 genomes]
rs2586406	0.97[ASN][1000 genomes]
rs2586409	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586414	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586417	0.97[ASN][1000 genomes]
rs2586418	0.97[ASN][1000 genomes]
rs2586419	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586422	0.97[ASN][1000 genomes]
rs2586423	0.91[ASN][1000 genomes]
rs2586425	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586426	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2757485	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757486	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757487	0.97[ASN][1000 genomes]
rs2757488	0.97[ASN][1000 genomes]
rs2757489	0.97[ASN][1000 genomes]
rs2757490	0.97[ASN][1000 genomes]
rs2757491	0.97[ASN][1000 genomes]
rs2757492	0.97[ASN][1000 genomes]
rs2757497	0.97[ASN][1000 genomes]
rs2757498	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757499	0.97[ASN][1000 genomes]
rs2757500	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757501	0.94[ASN][1000 genomes]
rs2757502	0.97[ASN][1000 genomes]
rs2757505	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61807830	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61807832	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6424867	0.97[ASN][1000 genomes]
rs6677550	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6702094	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73044902	0.97[ASN][1000 genomes]
rs74124018	0.97[ASN][1000 genomes]
rs9425269	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9425271	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425284	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425285	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425544	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425552	0.82[ASN][1000 genomes]
rs9633302	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172239000-172262000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:172247800-172255800	Weak transcription	Left Ventricle	heart
3	chr1:172247800-172256000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:172248000-172253600	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:172248200-172255400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172248200-172255400	Weak transcription	HSMM	muscle
7	chr1:172248200-172255400	Weak transcription	NHLF	lung
8	chr1:172248200-172255800	Weak transcription	Aorta	Aorta
9	chr1:172249200-172255400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:172249200-172255600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:172249400-172256000	Weak transcription	Esophagus	oesophagus
12	chr1:172249600-172255000	Weak transcription	NHDF-Ad	bronchial
13	chr1:172251800-172257000	Weak transcription	Right Ventricle	heart
14	chr1:172253000-172253800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:172253000-172253800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:172253000-172257200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:172253200-172253600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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