Variant report

Variant	rs2255707
Chromosome Location	chr1:172254777-172254778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172227773..172230310-chr1:172254726..172257439,2	MCF-7	breast:
2	chr1:172253395..172255527-chr1:172290385..172292894,2	MCF-7	breast:
3	chr1:172248264..172251646-chr1:172254476..172256076,3	K562	blood:
4	chr1:172250146..172252710-chr1:172254053..172256076,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10752923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12096225	0.97[ASN][1000 genomes]
rs12097276	0.94[ASN][1000 genomes]
rs2251991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2254703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254810	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255076	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2256059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2422076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2422077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2586390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2586395	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586396	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs2586399	0.91[ASN][1000 genomes]
rs2586400	0.97[ASN][1000 genomes]
rs2586402	0.97[ASN][1000 genomes]
rs2586405	0.97[ASN][1000 genomes]
rs2586406	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2586409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586414	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586417	0.97[ASN][1000 genomes]
rs2586418	0.97[ASN][1000 genomes]
rs2586419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2586423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2586425	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2586426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2757485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757486	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757487	0.97[ASN][1000 genomes]
rs2757488	0.97[ASN][1000 genomes]
rs2757489	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs2757490	0.88[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs2757491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2757492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2757497	0.97[ASN][1000 genomes]
rs2757498	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757499	0.97[ASN][1000 genomes]
rs2757500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2757501	0.94[ASN][1000 genomes]
rs2757502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2757505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2757506	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61807830	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61807832	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6424867	0.97[ASN][1000 genomes]
rs6677550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6702094	0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73044902	0.97[ASN][1000 genomes]
rs74124018	0.97[ASN][1000 genomes]
rs9425269	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9425271	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425284	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425285	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425544	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9425552	0.82[ASN][1000 genomes]
rs9633302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172239000-172262000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:172247800-172255800	Weak transcription	Left Ventricle	heart
3	chr1:172247800-172256000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:172248200-172255400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172248200-172255400	Weak transcription	HSMM	muscle
6	chr1:172248200-172255400	Weak transcription	NHLF	lung
7	chr1:172248200-172255800	Weak transcription	Aorta	Aorta
8	chr1:172249200-172255400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:172249200-172255600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:172249400-172256000	Weak transcription	Esophagus	oesophagus
11	chr1:172249600-172255000	Weak transcription	NHDF-Ad	bronchial
12	chr1:172251800-172257000	Weak transcription	Right Ventricle	heart
13	chr1:172253000-172257200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:172253600-172254800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:172253800-172254800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:172253800-172255200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:172254200-172255600	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:172254400-172255800	Weak transcription	Ovary	ovary
19	chr1:172254600-172255800	Weak transcription	Right Atrium	heart

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