Variant report

Variant	rs12097276
Chromosome Location	chr1:172266061-172266062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172261558..172263643-chr1:172263765..172267506,3	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10752923	0.88[ASN][1000 genomes]
rs12096225	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2251991	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2254703	0.88[ASN][1000 genomes]
rs2254720	0.88[ASN][1000 genomes]
rs2254810	0.88[ASN][1000 genomes]
rs2255076	0.88[ASN][1000 genomes]
rs2255460	0.88[ASN][1000 genomes]
rs2255707	0.94[ASN][1000 genomes]
rs2256059	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422076	0.88[ASN][1000 genomes]
rs2422077	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586390	0.88[ASN][1000 genomes]
rs2586395	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586396	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586398	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586399	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2586400	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586402	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586405	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586406	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586409	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586414	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586417	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586418	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586419	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586422	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586423	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2586425	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2586426	0.88[ASN][1000 genomes]
rs2757485	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757486	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757487	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757488	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757489	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757490	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757491	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757492	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757497	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757498	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757499	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757500	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757501	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2757502	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2757505	0.88[ASN][1000 genomes]
rs2757506	0.94[ASN][1000 genomes]
rs61807830	0.97[ASN][1000 genomes]
rs61807832	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6424867	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6677550	0.88[ASN][1000 genomes]
rs6702094	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73044902	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74124018	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425269	0.88[ASN][1000 genomes]
rs9425271	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425284	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425285	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425544	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425552	0.83[ASN][1000 genomes]
rs9633302	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172256200-172267400	Weak transcription	Left Ventricle	heart
2	chr1:172256200-172267400	Weak transcription	Psoas Muscle	Psoas
3	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:172257600-172267400	Weak transcription	Pancreas	Pancrea
7	chr1:172260600-172271000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:172263000-172267400	Weak transcription	Fetal Intestine Small	intestine
9	chr1:172263200-172267400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:172265000-172267200	Weak transcription	HSMM	muscle

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