Variant report

Variant	rs6697844
Chromosome Location	chr1:172308238-172308239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172305536..172310300-chr1:172311582..172315417,5	K562	blood:
2	chr1:172290966..172293542-chr1:172305681..172308662,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1011731	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10752943	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10752944	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10797996	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12404665	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12405515	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1894633	0.95[ASN][1000 genomes]
rs2001127	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2001128	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2001129	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2213732	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2227198	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2227199	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2227200	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2269612	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2301453	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34945663	0.81[ASN][1000 genomes]
rs4916252	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916253	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57668887	0.96[ASN][1000 genomes]
rs714515	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73046851	0.93[ASN][1000 genomes]
rs7517737	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7534393	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539464	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7546252	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9286854	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9425291	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425297	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425298	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425299	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425300	0.87[EUR][1000 genomes]
rs9425568	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425573	0.95[ASN][1000 genomes]
rs9425575	0.93[ASN][1000 genomes]
rs9425587	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9425589	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9425590	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425591	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425592	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs979935	0.93[ASN][1000 genomes]
rs991790	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6697844	PIGC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172275200-172309800	Weak transcription	Left Ventricle	heart
2	chr1:172304000-172312200	Weak transcription	Aorta	Aorta
3	chr1:172307400-172308600	Flanking Active TSS	GM12878-XiMat	blood
4	chr1:172307600-172312600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:172307800-172309200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:172307800-172312200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:172307800-172312200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:172308000-172311800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:172308000-172312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:172308000-172312000	Weak transcription	A549	lung
11	chr1:172308000-172312200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:172308000-172312200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:172308000-172312400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:172308000-172313200	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links