The 2.0 version of rSNPBase

Variant report

Variant rs9425573
Chromosome Location chr1:172330437-172330438
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172320800-172332800 Enhancers Fetal Intestine Small intestine
2 chr1:172322400-172331000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:172323000-172333000 Enhancers Fetal Intestine Large intestine
4 chr1:172325600-172331000 Enhancers Fetal Adrenal Gland Adrenal Gland
5 chr1:172325800-172331400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr1:172326200-172330800 Enhancers Stomach Mucosa stomach
7 chr1:172326400-172331200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
8 chr1:172326600-172330600 Enhancers Brain Cingulate Gyrus brain
9 chr1:172326600-172332200 Enhancers iPS-15b Cell Line embryonic stem cell
10 chr1:172326800-172330600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:172327000-172331000 Enhancers Primary T killer naive cells fromperipheralblood blood
12 chr1:172327000-172331000 Enhancers Fetal Muscle Leg muscle
13 chr1:172327000-172331000 Enhancers Small Intestine intestine
14 chr1:172327000-172331200 Enhancers Primary B cells from peripheral blood blood
15 chr1:172327000-172331200 Enhancers Fetal Stomach stomach
16 chr1:172327200-172332200 Enhancers Brain Substantia Nigra brain
17 chr1:172327600-172331000 Enhancers Primary T helper cells fromperipheralblood blood
18 chr1:172327800-172330800 Enhancers Brain Anterior Caudate brain
19 chr1:172327800-172330800 Enhancers HepG2 liver
20 chr1:172328000-172330800 Enhancers Primary T cells from cord blood blood
21 chr1:172328000-172330800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
22 chr1:172328000-172332400 Enhancers Cortex derived primary cultured neurospheres brain
23 chr1:172328200-172330800 Enhancers Primary T cells fromperipheralblood blood
24 chr1:172328200-172331000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:172328200-172331000 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr1:172328200-172331000 Enhancers Primary T killer memory cells from peripheral blood blood
27 chr1:172328200-172331200 Enhancers Primary T helper cells PMA-I stimulated --
28 chr1:172328400-172331000 Enhancers Brain Inferior Temporal Lobe brain
29 chr1:172328400-172331000 Enhancers HMEC breast
30 chr1:172328400-172331200 Enhancers Primary T helper 17 cells PMA-I stimulated --
31 chr1:172328400-172331400 Enhancers Fetal Lung lung
32 chr1:172328400-172331600 Weak transcription Brain Germinal Matrix brain
33 chr1:172328400-172334000 Weak transcription Aorta Aorta
34 chr1:172328600-172330600 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr1:172328600-172331000 Enhancers Brain Hippocampus Middle brain
36 chr1:172329000-172331000 Enhancers Rectal Mucosa Donor 31 rectum
37 chr1:172329000-172332000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
38 chr1:172329000-172332400 Weak transcription Fetal Brain Male brain
39 chr1:172329200-172330600 Enhancers NH-A brain
40 chr1:172329200-172331000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
41 chr1:172329200-172331200 Enhancers Fetal Kidney kidney
42 chr1:172329200-172334600 Weak transcription Primary hematopoietic stem cells blood
43 chr1:172329400-172330600 Flanking Active TSS HUES48 Cell Line embryonic stem cell
44 chr1:172329600-172330800 Enhancers Primary B cells from cord blood blood
45 chr1:172329600-172331200 Enhancers Spleen Spleen
46 chr1:172329800-172331000 Enhancers H9 Cell Line embryonic stem cell
47 chr1:172329800-172334000 Weak transcription Left Ventricle heart
48 chr1:172329800-172334000 Weak transcription Osteobl bone
49 chr1:172330000-172331000 Enhancers Sigmoid Colon Sigmoid Colon
50 chr1:172330000-172331200 Flanking Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015