Variant report

Variant	rs9425568
Chromosome Location	chr1:172316593-172316594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr1:172316583-172316965	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000252354	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1011731	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10752943	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10752944	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10797996	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12404665	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12405515	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1894633	0.95[ASN][1000 genomes]
rs2001127	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2001128	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2001129	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2213732	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2227198	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2227199	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2227200	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2269612	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2301453	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34945663	0.81[ASN][1000 genomes]
rs4916252	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916253	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57668887	0.96[ASN][1000 genomes]
rs6697844	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714515	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73046851	0.93[ASN][1000 genomes]
rs7517737	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7534393	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539464	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7546252	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9286854	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9425291	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425297	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9425298	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9425299	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9425300	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9425573	0.95[ASN][1000 genomes]
rs9425575	0.93[ASN][1000 genomes]
rs9425587	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9425589	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9425590	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9425591	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9425592	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs979935	0.93[ASN][1000 genomes]
rs991790	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9425568	PIGC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172313400-172327000	Weak transcription	Aorta	Aorta
2	chr1:172313600-172321000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:172313800-172319200	Weak transcription	Hela-S3	cervix
4	chr1:172314000-172320000	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:172314600-172319400	Weak transcription	Fetal Lung	lung
6	chr1:172314800-172319800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:172315000-172319800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:172315400-172316600	ZNF genes & repeats	GM12878-XiMat	blood
9	chr1:172315400-172317000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:172316200-172317400	Weak transcription	HUVEC	blood vessel

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